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PLM4_65_b1_redo_sep16_scaffold_7863

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_7863_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..316)
-----------------
DNA (315bp)
protein (105aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI0003629226
Uncharacterized protein {ECO:0000313|EMBL:KIO50286.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_7863_2
blood disease bacterium R229, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(320..634)
-----------------
DNA (315bp)
protein (105aa)
Uncharacterized protein Tax=Ralstonia RepID=D8NZZ7_RALSL
conserved protein of unknown function; putative prevent-host-death family protein
Uncharacterized protein {ECO:0000313|EMBL:CCA80403.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="blood disease bacterium R229.;"
PLM4_65_b1_redo_sep16_scaffold_7863_3
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(753..1820)
-----------------
DNA (1068bp)
protein (356aa)
Ribosome-binding ATPase YchF Tax=Nitrolancetus hollandicus Lb RepID=I4ECX0_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:KDA54131.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
GTP-dependent nucleic acid-binding protein EngD
PLM4_65_b1_redo_sep16_scaffold_7863_4

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comp(1896..3191)
-----------------
DNA (1296bp)
protein (432aa)
Putative DNA gyrase modulator Tax=uncultured bacterium RepID=Q5GMK7_9BACT
peptidase U62 modulator of DNA gyrase
Putative DNA gyrase modulator {ECO:0000313|EMBL:CAI50959.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
PLM4_65_b1_redo_sep16_scaffold_7863_5
Acidimicrobium ferrooxidans, Acidimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

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comp(3188..4573)
-----------------
DNA (1386bp)
protein (462aa)
Peptidase U62 modulator of DNA gyrase Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7M345_ACIFD
peptidase U62 modulator of DNA gyrase
Peptidase U62 modulator of DNA gyrase {ECO:0000313|EMBL:ACU53439.1}; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Acidimicrobium.;" source="Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC; 103882 / ICP).;"
PLM4_65_b1_redo_sep16_scaffold_7863_6
RBG_13_Deltaproteobacteria_60_28_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4614..5573
-----------------
DNA (960bp)
protein (320aa)
Uncharacterized protein Tax=Desulfobacca acetoxidans (strain ATCC 700848 / DSM 11109 / ASRB2) RepID=F2ND46_DESAR
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_60_28_curated
PLM4_65_b1_redo_sep16_scaffold_7863_7
RBG_13_Deltaproteobacteria_60_28_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5570..6586
-----------------
DNA (1017bp)
protein (339aa)
Uncharacterized protein Tax=Desulfovibrio sp. U5L RepID=I2Q5M3_9DELT
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_60_28_curated
PLM4_65_b1_redo_sep16_scaffold_7863_8
unknown

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comp(6609..7205)
-----------------
DNA (597bp)
protein (199aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_7863_9
Thermus thermophilus, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(7202..7555)
-----------------
DNA (354bp)
protein (118aa)
Uncharacterized protein Tax=Thermus RepID=F6DHF9_THETG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD70157.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579).;"
PLM4_65_b1_redo_sep16_scaffold_7863_10
Spirochaeta sp. JC202, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(7567..7968)
-----------------
DNA (402bp)
protein (134aa)
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta sp. JC202.;"
Protein CrcB homolog bin=GWA2_Ignavibacteria_55_11 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
crcB; protein crcB
PLM4_65_b1_redo_sep16_scaffold_7863_11
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(8018..8587)
-----------------
DNA (570bp)
protein (190aa)
NUDIX hydrolase Tax=Rhodothermus marinus RepID=D0MK35_RHOM4
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:AEN71992.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
PLM4_65_b1_redo_sep16_scaffold_7863_12
unknown

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8620..8778
-----------------
DNA (159bp)
protein (53aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_7863_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(8810..9583)
-----------------
DNA (774bp)
protein (258aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase Tax=Glaciibacter superstes RepID=UPI0003B75BFC
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase {ECO:0000313|EMBL:CDM64792.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
fumarylacetoacetate hydrolase family protein
PLM4_65_b1_redo_sep16_scaffold_7863_14
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9593..10453)
-----------------
DNA (861bp)
protein (287aa)
cobalamin/Fe3+-siderophores ABC transporter ATPase (EC:3.6.3.34)
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I8Z2_METCZ
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_b1_redo_sep16_scaffold_7863_15
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10443..11126)
-----------------
DNA (684bp)
protein (228aa)
btuC; vitamin B12 import system permease protein BtuC; K02015 iron complex transport system permease protein bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
ABC-type Fe3+-siderophore transport system, permease component
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
Displaying 15 items

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