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PLM4_65_b1_redo_sep16_scaffold_192

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_192_1
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(3..230)
DNA (228bp) protein (76aa)
hypothetical protein Tax=Balneola vulgaris RepID=UPI0003757CC5
protein of unknown function DUF305
Uncharacterized protein {ECO:0000313|EMBL:AHG88204.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_192_2
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

348..1175
DNA (828bp) protein (276aa)
UPI0003CFE58C related cluster Tax=unknown RepID=UPI0003CFE58C
5'-3' exonuclease {ECO:0000313|EMBL:ESZ21479.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
5'-3' exonuclease
PLM4_65_b1_redo_sep16_scaffold_192_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

1190..2326
DNA (1137bp) protein (379aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7V8_GEMAT
amidohydrolase 2
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_192_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

2958..4019
DNA (1062bp) protein (354aa)
Uncharacterized protein Tax=Methanomethylovorans hollandica (strain DSM 15978 / NBRC 107637 / DMS1) RepID=L0KXB5_METHD
protein of unknown function DUF1006
Uncharacterized protein {ECO:0000313|EMBL:AHG89171.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_192_5
unknown

Not on your lists

comp(4023..4919)
DNA (897bp) protein (299aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_192_6
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5006..5365
DNA (360bp) protein (120aa)
transcriptional regulator Tax=Amycolatopsis benzoatilytica RepID=UPI000375FC87
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EWC59680.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
ArsR family transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_192_7
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5343..5843
DNA (501bp) protein (167aa)
Activator of Hsp90 ATPase 1 family protein Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XK86_NAKMY
activator of Hsp90 ATPase 1 family protein
Tax=RBG_16_Gammaproteobacteria_66_13_curated
PLM4_65_b1_redo_sep16_scaffold_192_8
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

comp(6048..6212)
DNA (165bp) protein (55aa)
Putative uncharacterized protein bin=GWA2_OP3_52_12 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
PLM4_65_b1_redo_sep16_scaffold_192_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(6275..7111)
DNA (837bp) protein (279aa)
lgt; prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A600_GEMAT
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists


comp(7108..8145)
DNA (1038bp) protein (346aa)
tRNA N6-adenosine threonylcarbamoyltransferase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=TSAD_GEMAT
O-sialoglycoprotein endopeptidase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_11
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(8138..9082)
DNA (945bp) protein (315aa)
hypothetical protein Tax=Marinimicrobia bacterium JGI 0000039-D08 RepID=UPI0003A6F5AA
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_192_12
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(9069..9605)
DNA (537bp) protein (179aa)
Thiol-disulfide oxidoreductase ResA Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A602_GEMAT
resA; thiol-disulfide oxidoreductase ResA
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_192_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(9614..10285)
DNA (672bp) protein (224aa)
Ribulose-phosphate 3-epimerase Tax=Neisseria RepID=F9EWT8_9NEIS
ribulose-phosphate 3-epimerase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(10282..11229)
DNA (948bp) protein (316aa)
spk1; Serine/threonine-protein kinase PK-1 (EC:2.7.11.1)
Eukaryotic-type protein kinase Tax=Streptomyces coelicolor RepID=Q9ZNB3_STRCH
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_192_15
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(11226..12617)
DNA (1392bp) protein (464aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00274011};; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Putative ribosomal RNA small subunit methyltransferase B Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GRT3_SELRL
sun protein
PLM4_65_b1_redo_sep16_scaffold_192_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(12636..13433)
DNA (798bp) protein (266aa)
Thiazole synthase bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
thiG; thiamine biosynthesis protein ThiG
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_17
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13435..13650)
DNA (216bp) protein (72aa)
hypothetical protein Tax=Roseomonas sp. B5 RepID=UPI00030131A9
thiS; thiamine biosynthesis protein ThiS
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_18
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13647..14279)
DNA (633bp) protein (211aa)
Thiamine-phosphate synthase Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HA10_ANADF
thiamine-phosphate pyrophosphorylase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_19
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14276..15208)
DNA (933bp) protein (311aa)
Methionyl-tRNA formyltransferase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A606_GEMAT
Methionyl-tRNA formyltransferase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_20
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15210..15749)
DNA (540bp) protein (180aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase Tax=Alkalilimnicola ehrlichei (strain MLHE-1) RepID=DEF_ALHEH bin=16ft_combo_ws3_JS1 species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_21
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(15746..16090)
DNA (345bp) protein (115aa)
Preprotein translocase YajC subunit Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A608_GEMAT
yajC; preprotein translocase YajC subunit
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_22
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(16087..17220)
DNA (1134bp) protein (378aa)
Queuine tRNA-ribosyltransferase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A609_GEMAT
Queuine tRNA-ribosyltransferase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_23
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(17237..18307)
DNA (1071bp) protein (357aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6NYK9_9FIRM
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_24
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(18332..20524)
DNA (2193bp) protein (731aa)
Tetratricopeptide TPR_1 repeat-containing protein bin=GWF2_Planctomycete_41_51 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
TPR repeat-containing protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_192_25
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(20554..22683)
DNA (2130bp) protein (710aa)
Uncharacterized protein bin=GWC2_Ignavibacteria_38_9 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Ignavibacteria_38_9 organism_group=Ignavibacteria
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_192_26
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(22734..23759)
DNA (1026bp) protein (342aa)
Holliday junction ATP-dependent DNA helicase RuvB Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RUVB_GEMAT
ruvB; Holliday junction DNA helicase RuvB
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_27
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(23756..23941)
DNA (186bp) protein (62aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_192_28
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(23938..24531)
DNA (594bp) protein (198aa)
Holliday junction ATP-dependent DNA helicase RuvA Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=RUVA_GEMAT
ruvA; Holliday junction DNA helicase RuvA
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_192_29
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(24528..25016)
DNA (489bp) protein (163aa)
Crossover junction endodeoxyribonuclease RuvC Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A616_GEMAT
Crossover junction endodeoxyribonuclease ruvC
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_192_30
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(25013..25762)
DNA (750bp) protein (250aa)
Probable transcriptional regulatory protein NPH_1078 Tax=delta proteobacterium NaphS2 RepID=D8F3Q5_9DELT
UPF0082 protein yeeN
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
Displaying items 1-30 of 61 in total

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