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PLM4_65_b1_redo_sep16_scaffold_9377

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_9377_1
RBG_13_Caldithrix_44_9_curated, Caldithrix, Bacteria

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comp(2..634)
DNA (633bp) protein (211aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI0003825199
hypothetical protein
Tax=RBG_13_Caldithrix_44_9_curated
PLM4_65_b1_redo_sep16_scaffold_9377_2
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(772..2547)
DNA (1776bp) protein (592aa)
Uncharacterized protein Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2U9N8_9DELT
translation initiation factor IF-2
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_9377_3
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(2776..3318)
DNA (543bp) protein (181aa)
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_9377_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(3466..3954)
DNA (489bp) protein (163aa)
3-isopropylmalate dehydratase small subunit bin=GWA2_Elusimicrobia_56_46 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
3-isopropylmalate dehydratase small subunit
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_9377_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(3957..5249)
DNA (1293bp) protein (431aa)
3-isopropylmalate dehydratase large subunit bin=GWA2_Ignavibacteriae_54_16_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
3-isopropylmalate dehydratase large subunit
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_9377_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(5260..6459)
DNA (1200bp) protein (400aa)
Acyl-CoA transferase Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2MQE6_9PROT bin=16ft_combo_ws3_JS1 species=Thalassospira xiamenensis genus=Thalassospira taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
L-carnitine dehydratase/bile acid-inducible protein F
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_9377_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(6456..7361)
DNA (906bp) protein (302aa)
hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4)
Hydroxymethylglutaryl-CoA lyase bin=GWA2_Elusimicrobia_56_46 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_9377_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(7358..8494)
DNA (1137bp) protein (379aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
isocitrate/isopropylmalate dehydrogenase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_9377_9
Flavobacterium sp. EM1321, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8776..9948)
DNA (1173bp) protein (391aa)
Oxidoreductase, geranylgeranyl reductase family Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A4T4_PELCD
Uncharacterized protein {ECO:0000313|EMBL:KDN55250.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. EM1321.;"
oxidoreductase, geranylgeranyl reductase family
PLM4_65_b1_redo_sep16_scaffold_9377_10
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10090..10932
DNA (843bp) protein (281aa)
glutamate dehydrogenase (NAD(P)(+)) (EC:1.4.1.3)
hypothetical protein Tax=Gracilimonas tropica RepID=UPI000380DEC4
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
Displaying 10 items

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