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PLM4_65_b1_redo_sep16_scaffold_16570

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_16570_1

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comp(22..582)
DNA (561bp) protein (187aa)
Nitrogen-fixing NifU-like protein Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YB63_NITMU
Scaffold protein Nfu/NifU N terminal {ECO:0000313|EMBL:AIA14273.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
nitrogen-fixing NifU-like
PLM4_65_b1_redo_sep16_scaffold_16570_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1004..2143
DNA (1140bp) protein (380aa)
Glycosyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKF9_CHLTF
N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA {ECO:0000313|EMBL:CDM65317.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
glycosyltransferase
PLM4_65_b1_redo_sep16_scaffold_16570_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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2300..4213
DNA (1914bp) protein (638aa)
Selenocysteine-specific translation elongation factor SelB Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028S0_SOLUE
Selenocysteine-specific translation elongation factor SelB {ECO:0000313|EMBL:CDM64861.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
selenocysteine-specific translation elongation factor SelB
PLM4_65_b1_redo_sep16_scaffold_16570_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4460..4675
DNA (216bp) protein (72aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM64860.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_16570_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4862..5215
DNA (354bp) protein (118aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM64859.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_16570_6
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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5212..7092
DNA (1881bp) protein (627aa)
Putative uncharacterized protein Sb03g030340 Tax=Sorghum bicolor RepID=C5XFX7_SORBI
Endo-1,4-beta-mannosidase {ECO:0000313|EMBL:AKF04963.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
beta-mannosidase
PLM4_65_b1_redo_sep16_scaffold_16570_7

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comp(7592..9706)
DNA (2115bp) protein (705aa)
Peptidase S9 prolyl oligopeptidase Tax=uncultured bacterium 89 RepID=E3T696_9BACT
Peptidase S9 prolyl oligopeptidase {ECO:0000313|EMBL:ADC35840.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium 89.;"
peptidase S9 prolyl oligopeptidase
PLM4_65_b1_redo_sep16_scaffold_16570_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(9792..11549)
DNA (1758bp) protein (586aa)
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:CDM64730.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
glycosyl transferase family protein bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_16570_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

11964..12449
DNA (486bp) protein (162aa)
Radical SAM domain protein Tax=delta proteobacterium NaphS2 RepID=D8F1W4_9DELT
Predicted Fe-S oxidoreductase {ECO:0000313|EMBL:CDM64885.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_16570_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

12484..13134
DNA (651bp) protein (217aa)
Radical SAM domain protein Tax=delta proteobacterium NaphS2 RepID=D8F1W4_9DELT
Predicted Fe-S oxidoreductase {ECO:0000313|EMBL:CDM64885.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_16570_11
unknown

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comp(13426..13917)
DNA (492bp) protein (164aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_16570_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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14236..15591
DNA (1356bp) protein (452aa)
Amino acid/polyamine/organocation transporter, APC superfamily Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRM4_KORVE
Amino acid/polyamine/organocation transporter, APC superfamily (TC 2.A.3) {ECO:0000313|EMBL:CDM65696.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
amino acid transporter
PLM4_65_b1_redo_sep16_scaffold_16570_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

15588..16688
DNA (1101bp) protein (367aa)
Aminotransferase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IRM3_KORVE
Aspartate/tyrosine/aromatic aminotransferase {ECO:0000313|EMBL:CDM65695.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
aminotransferase
PLM4_65_b1_redo_sep16_scaffold_16570_14
unknown

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16672..16803
DNA (132bp) protein (44aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_16570_15
unknown

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comp(16947..17621)
DNA (675bp) protein (225aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_16570_16
RBG_19FT_COMBO_JS1_35_14_curated, Atribacteria, Bacteria

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comp(17903..19399)
DNA (1497bp) protein (499aa)
Uncharacterized protein Tax=Methanosarcina mazei RepID=M1PDC6_METMZ
hypothetical protein
Tax=RBG_19FT_COMBO_JS1_35_14_curated
PLM4_65_b1_redo_sep16_scaffold_16570_17
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19635..19805)
DNA (171bp) protein (57aa)
Uncharacterized protein Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YFN1_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH86836.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
Displaying 17 items

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