ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_5241

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5241_1
unknown

Not on your lists

comp(2..151)
DNA (150bp) protein (50aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5241_2
unknown

Not on your lists

comp(191..700)
DNA (510bp) protein (170aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5241_3
Trichodesmium erythraeum, Trichodesmium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(713..1792)
DNA (1080bp) protein (360aa)
hypothetical protein Tax=Nocardiopsis halophila RepID=UPI00034A6EBE
Cadherin {ECO:0000313|EMBL:ABG51788.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Trichodesmium.;" source="Trichodesmium erythraeum (strain IMS101).;"
Integrin alpha beta-propellor repeat-containing protein
PLM4_65_b1_redo_sep16_scaffold_5241_4
unknown

Not on your lists

2243..2482
DNA (240bp) protein (80aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5241_5
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(2383..3735)
DNA (1353bp) protein (451aa)
Peptidase S13 D-Ala-D-Ala carboxypeptidase C Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HPU7_CYAP4
peptidase S13 D-Ala-D-Ala carboxypeptidase C
Peptidase S13 D-Ala-D-Ala carboxypeptidase C {ECO:0000313|EMBL:ACL45656.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7425 / ATCC 29141).;"
PLM4_65_b1_redo_sep16_scaffold_5241_6
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

3951..4619
DNA (669bp) protein (223aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18); K03653 N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18] bin=bin1_lowGC species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=bin1_lowGC organism_group=Unknown_CP
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
PLM4_65_b1_redo_sep16_scaffold_5241_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

4689..6344
DNA (1656bp) protein (552aa)
Tfp pilus assembly protein PilF Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHE6_CHLTF
Cytochrome c biogenesis factor {ECO:0000313|EMBL:CDM67059.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Tfp pilus assembly protein PilF
PLM4_65_b1_redo_sep16_scaffold_5241_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6341..6817
DNA (477bp) protein (159aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LFU5_CHLTF
Predicted nucleic acid-binding protein, contains PIN domain {ECO:0000313|EMBL:CDM67058.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_5241_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6934..7170
DNA (237bp) protein (79aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM67057.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_5241_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

7261..8049
DNA (789bp) protein (263aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM67056.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_5241_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8242..8859
DNA (618bp) protein (206aa)
Soluble lytic murein transglycosylase-like protein {ECO:0000313|EMBL:CDM67055.1}; EC=3.2.1.- {ECO:0000313|EMBL:CDM67055.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Soluble lytic murein transglycosylase Tax=Methylacidiphilum fumariolicum SolV RepID=I0JVH4_9BACT
mltE; Soluble lytic murein transglycosylase
PLM4_65_b1_redo_sep16_scaffold_5241_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8893..9567
DNA (675bp) protein (225aa)
Uncharacterized membrane protein {ECO:0000313|EMBL:CDM67053.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Putative cation transporter bin=GWB1_Deltaproteobacteria_rel_55_8 species=Bacteriovorax marinus genus=Bacteriovorax taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
MgtC/SapB transporter
PLM4_65_b1_redo_sep16_scaffold_5241_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

9614..11008
DNA (1395bp) protein (465aa)
Cytosine deaminase-like metal-dependent hydrolase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEA9_CHLTF
Cytosine deaminase-like metal-dependent hydrolase {ECO:0000313|EMBL:CDM67052.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
cytosine deaminase
PLM4_65_b1_redo_sep16_scaffold_5241_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(11112..12473)
DNA (1362bp) protein (454aa)
4-aminobutyrate aminotransferase apoenzyme {ECO:0000313|EMBL:CDM66738.1}; EC=2.6.1.19 {ECO:0000313|EMBL:CDM66738.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
4-aminobutyrate aminotransferase (EC:2.6.1.19)
4-aminobutyrate aminotransferase apoenzyme Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHW0_CHLTF
PLM4_65_b1_redo_sep16_scaffold_5241_15
Flavobacterium psychrophilum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12745..13305)
DNA (561bp) protein (187aa)
Uncharacterized protein Tax=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) RepID=A6H065_FLAPJ
Uncharacterized protein {ECO:0000313|EMBL:AKC16878.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_5241_16
unknown

Not on your lists

13536..13718
DNA (183bp) protein (61aa)

This feature has no annotations

Displaying 16 items

View Taxonomy