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PLM4_65_b1_redo_sep16_scaffold_4088

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4088_1
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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216..887
DNA (672bp) protein (224aa)
Phosphoribosyltransferase Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E9Z7_METEZ
Phosphoribosyl transferase domain protein
Phosphoribosyl transferase domain protein {ECO:0000313|EMBL:AKB58370.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barkeri 227.;"
PLM4_65_b1_redo_sep16_scaffold_4088_2
R_Planctomycetes_38_41, Planctomycetes, Bacteria

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comp(1077..2921)
DNA (1845bp) protein (615aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000371377C
Fis family transcriptional regulator
Tax=RIFCSPHIGHO2_02_FULL_Planctomycetes_38_41_curated
PLM4_65_b1_redo_sep16_scaffold_4088_3
unknown

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3420..3896
DNA (477bp) protein (159aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4088_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(4000..5649)
DNA (1650bp) protein (550aa)
5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase {ECO:0000313|EMBL:CDM66945.1}; EC=3.1.4.16 {ECO:0000313|EMBL:CDM66945.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
2,3-cyclic-nucleotide 2'phosphodiesterase (EC:3.1.4.16)
2',3'-cyclic-nucleotide 2'-phosphodiesterase Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZS51_OPITP
PLM4_65_b1_redo_sep16_scaffold_4088_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(5730..7400)
DNA (1671bp) protein (557aa)
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase {ECO:0000313|EMBL:CDM66946.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_4088_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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7807..8904
DNA (1098bp) protein (366aa)
ABC-type transport system, involved in lipoprotein release, permease component Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LK45_CHLTF
ABC-type transport system, involved in lipoprotein release, permease component {ECO:0000313|EMBL:CDM64960.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
lipoprotein release ABC transporter permease
PLM4_65_b1_redo_sep16_scaffold_4088_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(8965..10116)
DNA (1152bp) protein (384aa)
Uncharacterised protein family (UPF0104) {ECO:0000313|EMBL:CDM66947.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
integral membrane protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PLM4_65_b1_redo_sep16_scaffold_4088_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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10531..13836
DNA (3306bp) protein (1102aa)
Lipolytic protein G-D-S-L family Tax=Geitlerinema sp. PCC 7407 RepID=K9S587_9CYAN
Subtilisin-like serine protease {ECO:0000313|EMBL:CDM65844.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
G-D-S-L family lipolytic protein
PLM4_65_b1_redo_sep16_scaffold_4088_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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14013..15194
DNA (1182bp) protein (394aa)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CDM66948.1}; EC=1.3.8.1 {ECO:0000313|EMBL:CDM66948.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Butyryl-CoA dehydrogenase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISL6_KORVE
butyryl-CoA dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_4088_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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15208..15594
DNA (387bp) protein (129aa)
TPR repeat-containing protein Tax=Thermocrinis albus (strain DSM 14484 / JCM 11386 / HI 11/12) RepID=D3SLS0_THEAH
Anaphase-promoting complex, cyclosome, subunit 3 {ECO:0000313|EMBL:CDM66949.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_4088_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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15624..17732
DNA (2109bp) protein (703aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit {ECO:0000313|EMBL:CDM66950.1}; EC=1.2.4.4 {ECO:0000313|EMBL:CDM66950.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type subunit beta (EC:1.2.4.4)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHN3_CHLTF
PLM4_65_b1_redo_sep16_scaffold_4088_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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17686..17898
DNA (213bp) protein (71aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit {ECO:0000313|EMBL:CDM66950.1}; EC=1.2.4.4 {ECO:0000313|EMBL:CDM66950.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Dehydrogenase, E1 component Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQR3_KORVE
dehydrogenase, E1 component
PLM4_65_b1_redo_sep16_scaffold_4088_13
unknown

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comp(17945..18502)
DNA (558bp) protein (186aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4088_14
RBG_13_Deltaproteobacteria_58_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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18824..19966
DNA (1143bp) protein (381aa)
Putative uncharacterized protein bin=GWC2_Deltaproteobacteria_42_51 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_13_Deltaproteobacteria_58_19_curated
PLM4_65_b1_redo_sep16_scaffold_4088_15
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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comp(20057..21460)
DNA (1404bp) protein (468aa)
Putative Zn-dependent peptidase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LFI1_CHLTF
putative Zn-dependent peptidase
Putative Zn-dependent peptidase {ECO:0000313|EMBL:AEP11382.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_4088_16
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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comp(21525..22994)
DNA (1470bp) protein (490aa)
Putative Zn-dependent peptidase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHP8_CHLTF
putative Zn-dependent peptidase
Putative Zn-dependent peptidase {ECO:0000313|EMBL:AEP12712.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
Displaying 16 items

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