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PLM4_65_b1_redo_sep16_scaffold_4853

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4853_1
RLO_RIF03_38_15, RIF3, Bacteria

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1..621
DNA (621bp) protein (207aa)
Periplasmic binding protein Tax=delta proteobacterium MLMS-1 RepID=Q1NTN0_9DELT
ABC transporter cobalamide binding protein
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
PLM4_65_b1_redo_sep16_scaffold_4853_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1209..3311
DNA (2103bp) protein (701aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036FB88F
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:CDM66104.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ferrienterochelin and colicins outer membrane receptor
PLM4_65_b1_redo_sep16_scaffold_4853_3
RBG_16_Planctomycetes_43_13_curated, Planctomycetes, Bacteria

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3337..4071
DNA (735bp) protein (245aa)
ATP-binding protein; K06927 bin=bin1_lowGC species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
ATP-binding protein
Tax=RBG_16_Planctomycetes_43_13_curated
PLM4_65_b1_redo_sep16_scaffold_4853_4
CG_Omnitr_06, Omnitrophica, Bacteria

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4149..5078
DNA (930bp) protein (310aa)
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
periplasmic binding protein
Tax=CG_Omnitr_06
PLM4_65_b1_redo_sep16_scaffold_4853_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(5226..5603)
DNA (378bp) protein (126aa)
Putative uncharacterized protein Tax=Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) RepID=Q6MR35_BDEBA
Uncharacterized protein {ECO:0000313|EMBL:CDM66296.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_4853_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

5854..6954
DNA (1101bp) protein (367aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66295.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_4853_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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7293..8762
DNA (1470bp) protein (490aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (EC:6.3.5.7)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LG32_CHLTF
PLM4_65_b1_redo_sep16_scaffold_4853_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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9083..9805
DNA (723bp) protein (241aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66293.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
short chain dehydrogenase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
short-chain dehydrogenase/reductase SDR
PLM4_65_b1_redo_sep16_scaffold_4853_9
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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9821..10900
DNA (1080bp) protein (360aa)
hypothetical protein Tax=filamentous cyanobacterium ESFC-1 RepID=UPI00035DBEC8
Tfp pilus assembly protein PilF
Tfp pilus assembly protein PilF {ECO:0000313|EMBL:AEP13135.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_4853_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10904..11353
DNA (450bp) protein (150aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
D-tyrosyl-tRNA(Tyr) deacylase Tax=Schlesneria paludicola RepID=UPI00029ABCA7
D-tyrosyl-tRNA(Tyr) deacylase
PLM4_65_b1_redo_sep16_scaffold_4853_11
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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11426..12181
DNA (756bp) protein (252aa)
cyclophilin type peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase (Rotamase)-cyclophilin family {ECO:0000313|EMBL:AEP11836.1}; EC=5.2.1.8 {ECO:0000313|EMBL:AEP11836.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
Peptidyl-prolyl cis-trans isomerase (Rotamase)-cyclophilin family Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LH94_CHLTF
PLM4_65_b1_redo_sep16_scaffold_4853_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(12349..12747)
DNA (399bp) protein (133aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM65702.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_4853_13
Cyanothece sp. ATCC 51142, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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13012..13308
DNA (297bp) protein (99aa)
Uncharacterized protein Tax=Cyanothece RepID=B1WWY7_CYAA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB52456.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain ATCC 51142).;"
PLM4_65_b1_redo_sep16_scaffold_4853_14
Cyanothece sp. ATCC 51142, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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13283..13555
DNA (273bp) protein (91aa)
Uncharacterized protein Tax=Cyanothece RepID=B1WWY8_CYAA5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB52457.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain ATCC 51142).;"
PLM4_65_b1_redo_sep16_scaffold_4853_15
Chlorobium ferrooxidans, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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13743..14261
DNA (519bp) protein (173aa)
Uncharacterized protein Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YUH3_9CHLB
Uncharacterized protein {ECO:0000313|EMBL:EAT60058.1}; Flags: Precursor;; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium ferrooxidans DSM 13031.;"
hypothetical protein
Displaying 15 items

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