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PLM4_65_b1_redo_sep16_scaffold_1794

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1794_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(1..543)
DNA (543bp) protein (181aa)
Integral membrane protein Rhomboid family protein Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJM0_9BACT
Uncharacterized membrane protein {ECO:0000313|EMBL:CDM65786.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1794_2

Not on your lists

comp(1059..1775)
DNA (717bp) protein (239aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2BBF1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD70876.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phospholipase C/P1 nuclease domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_1794_3
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2110..2676)
DNA (567bp) protein (189aa)
Ferritin Dps family protein Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BVX9_NITHN
Bacterioferritin {ECO:0000313|EMBL:ETX06734.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
ferritin
PLM4_65_b1_redo_sep16_scaffold_1794_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(2804..4762)
DNA (1959bp) protein (653aa)
Uncharacterized protein Tax=planctomycete KSU-1 RepID=I3IJZ4_9PLAN
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:CDM65785.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Thiol-disulfide isomerase / thioredoxin
PLM4_65_b1_redo_sep16_scaffold_1794_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(4982..5350)
DNA (369bp) protein (123aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
alkylhydroperoxidase Tax=Arenimonas oryziterrae RepID=UPI0003B6D795
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1794_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

5647..6150
DNA (504bp) protein (168aa)
Chemotaxis protein CheW Tax=Rhizobium tropici CIAT 899 RepID=L0LS48_RHITR
Chemotaxis signal transduction protein {ECO:0000313|EMBL:CDM65783.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
chemotaxis protein CheW
PLM4_65_b1_redo_sep16_scaffold_1794_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

6378..8954
DNA (2577bp) protein (859aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Endonuclease MutS2 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGJ6_CHLTF
MutS2 family protein
PLM4_65_b1_redo_sep16_scaffold_1794_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

8966..10792
DNA (1827bp) protein (609aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
DNA primase catalytic subunit (EC:2.7.7.-)
DNA primase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHR3_CHLTF
PLM4_65_b1_redo_sep16_scaffold_1794_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

10893..12641
DNA (1749bp) protein (583aa)
RNA polymerase sigma70 factor Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000374241F
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
sigma 38, RpoS
PLM4_65_b1_redo_sep16_scaffold_1794_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(12718..13101)
DNA (384bp) protein (128aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM64691.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_1794_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(13105..14259)
DNA (1155bp) protein (385aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LFA7_CHLTF
PLM4_65_b1_redo_sep16_scaffold_1794_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(14815..16185)
DNA (1371bp) protein (457aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00037E92FF
phosphoglucosamine mutase
PLM4_65_b1_redo_sep16_scaffold_1794_13
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(16215..17024)
DNA (810bp) protein (270aa)
YbbR-like protein {ECO:0000313|EMBL:CDM66576.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
YbbR family protein bin=GWC2_Methylomirabilis_70_16 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1794_14
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(17103..17963)
DNA (861bp) protein (287aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEP6_CHLTF
TIGR00159 family protein {ECO:0000313|EMBL:CDM66575.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1794_15
Nostoc punctiforme, Nostoc, Nostocales, Cyanobacteria, Bacteria

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comp(18058..19005)
DNA (948bp) protein (316aa)
Cation diffusion facilitator family transporter Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J2M5_NOSP7
cation diffusion facilitator family transporter
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ACC80456.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc punctiforme (strain ATCC 29133 / PCC 73102).;"
PLM4_65_b1_redo_sep16_scaffold_1794_16
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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comp(19193..20260)
DNA (1068bp) protein (356aa)
Peptidase M50 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I5W5_RHOVT
Peptidase M50 family protein {ECO:0000313|EMBL:GAN34806.1}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
peptidase M50
PLM4_65_b1_redo_sep16_scaffold_1794_17
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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comp(20456..22138)
DNA (1683bp) protein (561aa)
Adenylate cyclase, family 3 (Some proteins contain HAMP domain) Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LLM0_CHLTF
adenylate cyclase
Adenylate cyclase, family 3 (Some proteins contain HAMP domain) {ECO:0000313|EMBL:AEP13816.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_1794_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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22414..24090
DNA (1677bp) protein (559aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1794_19
unknown

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24174..25901
DNA (1728bp) protein (576aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1794_20
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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26295..26840
DNA (546bp) protein (182aa)
Transcriptional regulator, CarD like protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LG97_CHLTF
Transcriptional regulator, CarD family {ECO:0000313|EMBL:CDM65831.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
transcriptional regulator, CarD like protein
PLM4_65_b1_redo_sep16_scaffold_1794_21
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

27111..28469
DNA (1359bp) protein (453aa)
CBS domain-containing protein {ECO:0000313|EMBL:CDM65614.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Putative uncharacterized protein bin=GWF2_Geobacter_54_21 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1794_22

Not on your lists

28572..29924
DNA (1353bp) protein (451aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
enolase (EC:4.2.1.11)
Enolase Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZGM7_TERRK
PLM4_65_b1_redo_sep16_scaffold_1794_23
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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29942..30427
DNA (486bp) protein (162aa)
GCN5-related N-acetyltransferase Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EEY7_RUNSL
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AEI48598.1}; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
PLM4_65_b1_redo_sep16_scaffold_1794_24
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

30449..31999
DNA (1551bp) protein (517aa)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
gpmI; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LD76_THEPS
PLM4_65_b1_redo_sep16_scaffold_1794_25
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

32055..33083
DNA (1029bp) protein (343aa)
ADP-heptose--LPS heptosyltransferase; K02841 heptosyltransferase I [EC:2.4.-.-] bin=bin7_NC10_sister species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin7_NC10_sister organism_group=NC10
ADP-heptose:LPS heptosyltransferase {ECO:0000313|EMBL:CDM65824.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
lipopolysaccharide heptosyltransferase II
PLM4_65_b1_redo_sep16_scaffold_1794_26
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

33184..34188
DNA (1005bp) protein (335aa)
D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family {ECO:0000313|EMBL:CDM66825.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CDM66825.1};; EC=3.4.21.- {ECO:0000313|EMBL:CDM66825.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEX5_CHLTF
PLM4_65_b1_redo_sep16_scaffold_1794_27
R_Acidobacteria_67_28, Acidobacteria, Bacteria

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34185..34793
DNA (609bp) protein (203aa)
D-Ala-D-Ala carboxypeptidase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1II05_KORVE
D-alanyl-D-alanine carboxypeptidase
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_65_b1_redo_sep16_scaffold_1794_28
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

34956..36092
DNA (1137bp) protein (379aa)
TonB family C-terminal domain protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGE2_CHLTF
TonB family protein {ECO:0000313|EMBL:CDM65823.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
TonB family C-terminal domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_1794_29
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

36173..37129
DNA (957bp) protein (319aa)
Roadblock/LC7 domain protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEW4_CHLTF
TonB family protein {ECO:0000313|EMBL:CDM65822.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Roadblock/LC7 domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_1794_30
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(37210..38424)
DNA (1215bp) protein (405aa)
Isopropylmalate/homocitrate/citramalate synthase {ECO:0000313|EMBL:CDM66977.1}; EC=2.3.3.13 {ECO:0000313|EMBL:CDM66977.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase Tax=Sorangium cellulosum (strain So ce56) RepID=A9FMN1_SORC5 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Displaying items 1-30 of 34 in total

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