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PLM4_65_b1_redo_sep16_scaffold_40984

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_40984_1
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(1..1497)
DNA (1497bp) protein (499aa)
UvrABC system protein A Tax=uncultured Acidobacteria bacterium RepID=H5SCJ2_9BACT
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
excinuclease ABC subunit A
PLM4_65_b1_redo_sep16_scaffold_40984_2
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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1779..2516
DNA (738bp) protein (246aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:CDM66236.1}; EC=2.7.8.5 {ECO:0000313|EMBL:CDM66236.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LF03_CHLTF
PLM4_65_b1_redo_sep16_scaffold_40984_trna_1
unknown

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2748..2820
DNA (73bp)
transferRNA Thr
PLM4_65_b1_redo_sep16_scaffold_40984_trna_2
unknown

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2844..2928
DNA (85bp)
transferRNA Tyr
PLM4_65_b1_redo_sep16_scaffold_40984_trna_3
unknown

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2972..3044
DNA (73bp)
transferRNA Gly
PLM4_65_b1_redo_sep16_scaffold_40984_trna_4
unknown

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3131..3202
DNA (72bp)
transferRNA Thr
PLM4_65_b1_redo_sep16_scaffold_40984_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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3275..4462
DNA (1188bp) protein (396aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHU1_CHLTF
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
PLM4_65_b1_redo_sep16_scaffold_40984_4
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4549..4869
DNA (321bp) protein (107aa)
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpsJ; 30S ribosomal protein S10
PLM4_65_b1_redo_sep16_scaffold_40984_5
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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4959..5618
DNA (660bp) protein (220aa)
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L3 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
50S ribosomal protein L3
PLM4_65_b1_redo_sep16_scaffold_40984_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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5695..6471
DNA (777bp) protein (259aa)
50S ribosomal protein L4 Tax=Acetonema longum DSM 6540 RepID=F7NF95_9FIRM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
ribosomal protein L4/L1e
PLM4_65_b1_redo_sep16_scaffold_40984_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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6471..6776
DNA (306bp) protein (102aa)
50S ribosomal protein L23 Tax=Koribacter versatilis (strain Ellin345) RepID=RL23_KORVE
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rplW; 50S ribosomal protein L23
PLM4_65_b1_redo_sep16_scaffold_40984_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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6864..7694
DNA (831bp) protein (277aa)
50S ribosomal protein L2 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003735D53
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rplB; 50S ribosomal protein L2
PLM4_65_b1_redo_sep16_scaffold_40984_9
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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7714..8016
DNA (303bp) protein (101aa)
30S ribosomal protein S19 Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=RS19_THEYD
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
rpsS; 30S ribosomal protein S19
PLM4_65_b1_redo_sep16_scaffold_40984_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists


8106..8705
DNA (600bp) protein (200aa)
50S ribosomal protein L22 Tax=Mycobacterium sp. (strain JDM601) RepID=F5YYL4_MYCSD
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
50S ribosomal protein L22
Displaying 14 items

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