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PLM4_65_b1_redo_sep16_scaffold_3155

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3155_1
Hyphomonadaceae bacterium BRH_c29, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..235)
DNA (234bp) protein (78aa)
Transcriptional regulator Tax=Caulobacter sp. AP07 RepID=J3AFH5_9CAUL
LysR-family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:KJS25388.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae.;" source="Hyphomonadaceae bacterium BRH_c29.;"
PLM4_65_b1_redo_sep16_scaffold_3155_2
unknown

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474..590
DNA (117bp) protein (39aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3155_3
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

617..2026
DNA (1410bp) protein (470aa)
hypothetical protein Tax=Kiloniella laminariae RepID=UPI00037D3BEF
uroporphyrin-III C-methyltransferase
Siroheme synthase {ECO:0000256|HAMAP-Rule:MF_01646}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
PLM4_65_b1_redo_sep16_scaffold_3155_4
Pararhodospirillum photometricum, Pararhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2023..2355
DNA (333bp) protein (111aa)
Uncharacterized protein Tax=Rhodospirillum photometricum DSM 122 RepID=H6SQJ9_RHOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG07314.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Pararhodospirillum.;" source="Rhodospirillum photometricum DSM 122.;"
PLM4_65_b1_redo_sep16_scaffold_3155_5
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2363..4018
DNA (1656bp) protein (552aa)
sulfite reductase Tax=Fodinicurvata sediminis RepID=UPI0003B5C6C5
Sulfite reductase {ECO:0000313|EMBL:KEO58502.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
sulfite reductase
PLM4_65_b1_redo_sep16_scaffold_3155_6
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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4005..4505
DNA (501bp) protein (167aa)
hypothetical protein Tax=Fodinicurvata sediminis RepID=UPI0003B6257E
Conserved protein {ECO:0000313|EMBL:GAK45133.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3155_7
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4502..5251
DNA (750bp) protein (250aa)
Phosphoadenylyl-sulfate reductase (thioredoxin) {ECO:0000256|SAAS:SAAS00089161}; EC=1.8.4.8 {ECO:0000256|SAAS:SAAS00089161};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
phosphoadenosine phosphosulfate reductase Tax=Sphingomonas echinoides RepID=UPI00026CC8EB
phosphoadenosine phosphosulfate reductase
PLM4_65_b1_redo_sep16_scaffold_3155_8
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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5248..6042
DNA (795bp) protein (265aa)
Sulfate adenylyltransferase subunit 2 {ECO:0000313|EMBL:CDO59095.1}; EC=2.7.7.4 {ECO:0000313|EMBL:CDO59095.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein Tax=Novispirillum itersonii RepID=UPI0003666288
phosphoadenosine phosphosulfate reductase
PLM4_65_b1_redo_sep16_scaffold_3155_9
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6044..8002
DNA (1959bp) protein (653aa)
Sulfate adenylyltransferase large subunit Tax=Oceanibaculum indicum P24 RepID=K2ITK9_9PROT
Sulfate adenylyltransferase large subunit {ECO:0000313|EMBL:EKE73601.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
NodQ bifunctional enzyme
PLM4_65_b1_redo_sep16_scaffold_3155_10
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7951..9855)
DNA (1905bp) protein (635aa)
Two-component hybrid sensor and regulator Tax=alpha proteobacterium BAL199 RepID=A8TTM3_9PROT
Two-component hybrid sensor and regulator {ECO:0000313|EMBL:EDP64154.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
sensor histidine kinase
PLM4_65_b1_redo_sep16_scaffold_3155_11
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10055..11359)
DNA (1305bp) protein (435aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0002DD17C4
TRAP dicarboxylate transporter
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_3155_12
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11368..11925)
DNA (558bp) protein (186aa)
hypothetical protein Tax=Halomonas sp. BJGMM-B45 RepID=UPI0003AF02D7
TRAP dicarboxylate transporter subunit DctQ
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_3155_13
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11994..12971)
DNA (978bp) protein (326aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI00037F481C
TRAP dicarboxylate transporter subunit DctP {ECO:0000313|EMBL:EKF43811.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
putative periplasmic substrate binding protein
PLM4_65_b1_redo_sep16_scaffold_3155_14

Not on your lists

13220..13990
DNA (771bp) protein (257aa)
Uncharacterized protein Tax=Rhizobium sp. (strain NGR234) RepID=C3KNJ3_RHISN
Uncharacterized protein {ECO:0000313|EMBL:KKN82602.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3155_15
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13997..15190
DNA (1194bp) protein (398aa)
Probable monooxygenase protein Tax=Rhizobium sp. (strain NGR234) RepID=C3KNJ4_RHISN
monooxygenase
Probable monooxygenase protein {ECO:0000313|EMBL:ACP21652.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
PLM4_65_b1_redo_sep16_scaffold_3155_16
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

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comp(15378..15947)
DNA (570bp) protein (190aa)
transposase Tax=Verrucomicrobium spinosum RepID=UPI0001746596
transposase
Transposase {ECO:0000313|EMBL:AIE84828.1}; species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
PLM4_65_b1_redo_sep16_scaffold_3155_17
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16046..17347)
DNA (1302bp) protein (434aa)
C4-dicarboxylate ABC transporter permease Tax=Brevibacillus panacihumi W25 RepID=V6M9B0_9BACL
TRAP dicarboxylate transporter DctM subunit
TRAP dicarboxylate transporter DctM subunit {ECO:0000313|EMBL:AJE48452.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
PLM4_65_b1_redo_sep16_scaffold_3155_18
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17349..17819)
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=Brevibacillus panacihumi W25 RepID=V6M990_9BACL
TRAP transporter DctQ-like subunit
TRAP transporter DctQ-like subunit {ECO:0000313|EMBL:AJE48453.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
Displaying 18 items

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