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PLM4_65_b1_redo_sep16_scaffold_3324

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3324_1
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..716
DNA (714bp) protein (238aa)
Uncharacterized protein Tax=Afipia felis ATCC 53690 RepID=K8NIW5_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27510.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3324_2
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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709..2175
DNA (1467bp) protein (489aa)
Putative Glycosyl transferase, family 2 putative Dolichyl-phosphate beta-D-mannosyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6ABE6_9PROT
putative Glycosyl transferase, family 2; putative Dolichyl-phosphate beta-D-mannosyltransferase
Putative Glycosyl transferase, family 2 putative Dolichyl-phosphate beta-D-mannosyltransferase {ECO:0000313|EMBL:BAN36690.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM4_65_b1_redo_sep16_scaffold_3324_3
Sulfuricella denitrificans, Sulfuricella, Sulfuricellales, Betaproteobacteria, Proteobacteria, Bacteria

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2172..2921
DNA (750bp) protein (250aa)
Putative methyltransferase Tax=Sulfuricella denitrificans skB26 RepID=S6AP69_9PROT
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:BAN36689.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
PLM4_65_b1_redo_sep16_scaffold_3324_4
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2907..3956)
DNA (1050bp) protein (350aa)
GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
GDP-mannose 4,6-dehydratase Tax=Azospirillum brasilense RepID=Q6QW93_AZOBR
PLM4_65_b1_redo_sep16_scaffold_3324_5
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3990..4952)
DNA (963bp) protein (321aa)
fcl; GDP-L-fucose synthase (EC:1.1.1.271)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
GDP-L-fucose synthase Tax=Azospirillum sp. (strain B510) RepID=D3P8E5_AZOS1
PLM4_65_b1_redo_sep16_scaffold_3324_trna_1
unknown

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comp(5030..5103)
DNA (74bp)
transferRNA Met
PLM4_65_b1_redo_sep16_scaffold_3324_6
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5247..5990
DNA (744bp) protein (248aa)
CAAX amino terminal protease family protein Tax=Oceanicaulis sp. HTCC2633 RepID=A3UED7_9RHOB
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EAP91618.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
putative transmembrane CAAX amino terminal protease family
PLM4_65_b1_redo_sep16_scaffold_3324_7
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5987..7099)
DNA (1113bp) protein (371aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA Tax=Azospirillum amazonense Y2 RepID=G1Y1T4_9PROT
PLM4_65_b1_redo_sep16_scaffold_3324_8
unknown

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comp(7157..7408)
DNA (252bp) protein (84aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3324_9
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7541..9046)
DNA (1506bp) protein (502aa)
Uncharacterized protein Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z815_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS87123.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
PLM4_65_b1_redo_sep16_scaffold_3324_10
unknown

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9122..9715
DNA (594bp) protein (198aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3324_11
unknown

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9783..10424
DNA (642bp) protein (214aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3324_12
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10501..11313
DNA (813bp) protein (271aa)
Enoyl-CoA hydratase Tax=Caenispirillum salinarum AK4 RepID=K9GRF8_9PROT
Enoyl-CoA hydratase {ECO:0000313|EMBL:EKV27712.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
enoyl-CoA hydratase/isomerase family protein
PLM4_65_b1_redo_sep16_scaffold_3324_13
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11321..12088
DNA (768bp) protein (256aa)
phbB5; acetoacetyl-CoA reductase 5 (EC:1.1.1.36)
Acetoacetyl-CoA reductase 5 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HY10_ACHXA
2-hydroxycyclohexanecarboxyl-CoA dehydrogenase {ECO:0000313|EMBL:KGY16375.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Alcaligenes xylosoxydans xylosoxydans (Achromobacter xylosoxidans).;"
PLM4_65_b1_redo_sep16_scaffold_3324_14
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12158..12613)
DNA (456bp) protein (152aa)
Dehydratase {ECO:0000313|EMBL:GAN78192.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
Enoyl-CoA hydratase bin=GWF2_Methylomirabilis_70_14 species=Mycobacterium rhodesiae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
aldehyde dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_3324_15
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

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comp(12618..13730)
DNA (1113bp) protein (371aa)
formamidase (Formamide amidohydrolase) (EC:3.5.1.49)
Formamidase (Formamide amidohydrolase) {ECO:0000313|EMBL:ACM06595.1}; EC=3.5.1.49 {ECO:0000313|EMBL:ACM06595.1};; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI00031F29EC
PLM4_65_b1_redo_sep16_scaffold_3324_16
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13731..14927)
DNA (1197bp) protein (399aa)
isovaleryl-CoA dehydrogenase (EC:1.3.99.10)
Isovaleryl-CoA dehydrogenase Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R776_CUPTR
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:KIF66047.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
PLM4_65_b1_redo_sep16_scaffold_3324_17
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(14924..15928)
DNA (1005bp) protein (335aa)
Uncharacterized protein Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXV5_RAMTT
Uncharacterized protein {ECO:0000313|EMBL:ETW99921.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3324_18
unknown

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comp(15982..16113)
DNA (132bp) protein (44aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3324_19
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16173..17375)
DNA (1203bp) protein (401aa)
Thiolase, N-terminal domain subfamily, putative Tax=Labrenzia alexandrii DFL-11 RepID=B9QY91_9RHOB
Thiolase, N-terminal domain subfamily, putative {ECO:0000313|EMBL:EEE45149.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
acetyl-CoA acetyltransferase
PLM4_65_b1_redo_sep16_scaffold_3324_20
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17635..17874)
DNA (240bp) protein (80aa)
Lysine exporter protein (LYSE/YGGA) Tax=Mesorhizobium sp. STM 4661 RepID=M5FJP4_9RHIZ
Putative Homoserine/threonine efflux protein {ECO:0000313|EMBL:CCV03618.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
amino acid transporter LysE
Displaying 21 items

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