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PLM4_65_b1_redo_sep16_scaffold_3613

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3613_1
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..242
DNA (240bp) protein (80aa)
Threonine dehydratase {ECO:0000313|EMBL:EWY38906.1}; EC=4.3.1.19 {ECO:0000313|EMBL:EWY38906.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Threonine dehydratase Tax=Oceanibaculum indicum P24 RepID=K2JJ66_9PROT
threonine dehydratase
PLM4_65_b1_redo_sep16_scaffold_3613_2
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

332..778
DNA (447bp) protein (149aa)
hypothetical protein Tax=Hyphomicrobium zavarzinii RepID=UPI0003606C60
Uncharacterized protein {ECO:0000313|EMBL:EKE76422.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3613_3
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(834..1538)
DNA (705bp) protein (235aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
Ribosomal RNA large subunit methyltransferase E Tax=Phaeospirillum molischianum DSM 120 RepID=H8FQW0_PHAMO
23S rRNA methylase
PLM4_65_b1_redo_sep16_scaffold_3613_4
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1546..2730)
DNA (1185bp) protein (395aa)
Ppx/GppA phosphatase bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
Ppx/GppA phosphatase
Tax=GWF1_Rhodobacteraceae_65_7_curated
PLM4_65_b1_redo_sep16_scaffold_3613_trna_1
unknown

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2970..3040
DNA (71bp)
transferRNA Gln
PLM4_65_b1_redo_sep16_scaffold_3613_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3711..3899
DNA (189bp) protein (63aa)
hypothetical protein Tax=Hoeflea sp. 108 RepID=UPI00036C0538
pilA; type IV pilus protein
Component of type IV pilus {ECO:0000313|EMBL:ACM25069.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
PLM4_65_b1_redo_sep16_scaffold_3613_6
unknown

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3951..4250
DNA (300bp) protein (100aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3613_7
unknown

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4284..4562
DNA (279bp) protein (93aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3613_8
unknown

Not on your lists

comp(4540..4674)
DNA (135bp) protein (45aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3613_9
unknown

Not on your lists

comp(4677..4916)
DNA (240bp) protein (80aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3613_10
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5470..5700
DNA (231bp) protein (77aa)
Pilus subunit protein Tax=Rhizobium sp. CCGE 510 RepID=J5MK91_9RHIZ
Pilus subunit protein {ECO:0000313|EMBL:EJT03165.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
Flp/Fap pilin component protein
PLM4_65_b1_redo_sep16_scaffold_3613_11
unknown

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5810..5980
DNA (171bp) protein (57aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3613_12
unknown

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comp(6302..6871)
DNA (570bp) protein (190aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3613_13
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7479..7649)
DNA (171bp) protein (57aa)
PilA pilus assembly protein Tax=Rhizobium leguminosarum RepID=UPI00035D864D
Flp/Fap pilin component
Flp/Fap pilin component {ECO:0000313|EMBL:ADJ22140.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
PLM4_65_b1_redo_sep16_scaffold_3613_14
unknown

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comp(7882..8226)
DNA (345bp) protein (115aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3613_15
Pseudoalteromonas lipolytica, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8475..9134
DNA (660bp) protein (220aa)
Uncharacterized protein Tax=Rhodospirillum rubrum RepID=Q2RT78_RHORT
Membrane protein {ECO:0000313|EMBL:EWH07749.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source="Pseudoalteromonas lipolytica SCSIO 04301.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3613_16
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9164..10849)
DNA (1686bp) protein (562aa)
glutaminyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00126}; EC=6.1.1.18 {ECO:0000255|HAMAP-Rule:MF_00126};; Glutaminyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00126}; Short=GlnRS {ECO:0000255|HAMAP-Rule:MF_00126};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Glutamine--tRNA ligase Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=SYQ_NITWN
PLM4_65_b1_redo_sep16_scaffold_3613_17
Burkholderia sp. CCGE1003, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10998..12071
DNA (1074bp) protein (358aa)
Rhodanese domain protein Tax=Burkholderia sp. (strain CCGE1003) RepID=E1T3Z9_BURSG
rhodanese domain-containing protein
Rhodanese domain protein {ECO:0000313|EMBL:ADN56047.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1003).;"
PLM4_65_b1_redo_sep16_scaffold_3613_18
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12068..12568
DNA (501bp) protein (167aa)
Uncharacterized protein Tax=Sphingobium sp. SYK-6 RepID=G2IU86_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAK68611.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
PLM4_65_b1_redo_sep16_scaffold_3613_19
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12572..13027
DNA (456bp) protein (152aa)
hypothetical protein Tax=Aureimonas ureilytica RepID=UPI00037CF617
Uncharacterized protein {ECO:0000313|EMBL:EGP54064.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3613_20
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13161..14201
DNA (1041bp) protein (347aa)
ATP-dependent transcriptional regulator Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0ERH9_CUPNN
ATP-dependent transcriptional regulator
ATP-dependent transcriptional regulator {ECO:0000313|EMBL:AEI76616.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
PLM4_65_b1_redo_sep16_scaffold_3613_21
unknown

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comp(14164..14562)
DNA (399bp) protein (133aa)
Serine/threonine-protein kinase-like domain protein Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JW59_HYPDA
Serine/threonine protein kinase {ECO:0000313|EMBL:CPR16317.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Filomicrobium.;" source="Filomicrobium sp. Y.;"
serine/threonine-protein kinase-like domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_3613_trna_2
unknown

Not on your lists

14663..14734
DNA (72bp)
transferRNA Lys
PLM4_65_b1_redo_sep16_scaffold_3613_22
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14862..15293
DNA (432bp) protein (144aa)
Uncharacterized protein Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TQC3_TISMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK54961.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM4_65_b1_redo_sep16_scaffold_3613_23
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15452..15772
DNA (321bp) protein (107aa)
UPI0003CF7B23 related cluster Tax=unknown RepID=UPI0003CF7B23
Uncharacterized protein {ECO:0000313|EMBL:GAN77821.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3613_24
unknown

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15814..16035
DNA (222bp) protein (74aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3613_25
unknown

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comp(15924..16139)
DNA (216bp) protein (72aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3613_26
unknown

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16457..16669
DNA (213bp) protein (71aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3613_27
unknown

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16697..16918
DNA (222bp) protein (74aa)

This feature has no annotations

Displaying 29 items

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