ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_3754

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3754_1
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..388)
DNA (387bp) protein (129aa)
Rhodanese domain protein bin=GWE1_T_denit_62_9 species=endosymbiont of Tevnia jerichonana genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ydjX_[C]; SNARE associated golgi family protein
Tax=GWE1_Thiobacillus_62_9_curated
PLM4_65_b1_redo_sep16_scaffold_3754_2
R_Erythrobacter_63_10, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(410..538)
DNA (129bp) protein (43aa)
Putative Sterol desaturase Tax=uncultured organism RepID=Q1EI10_9ZZZZ
Tax=RIFCSPHIGHO2_12_FULL_Erythrobacter_63_10_curated
PLM4_65_b1_redo_sep16_scaffold_3754_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(535..1287)
DNA (753bp) protein (251aa)
Fatty acid hydroxylase Tax=Oceanibaculum indicum P24 RepID=K2IYG8_9PROT
sterol desaturase-like protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM4_65_b1_redo_sep16_scaffold_3754_4
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1377..2057
DNA (681bp) protein (227aa)
Sulfurtransferase Tax=Oceanibaculum indicum P24 RepID=K2IZG3_9PROT
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ArsR family transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_3754_5
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2227..3039)
DNA (813bp) protein (271aa)
UPI0003CF9940 related cluster Tax=unknown RepID=UPI0003CF9940
Transposase IS1 {ECO:0000313|EMBL:ESW83912.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
IS1 transposase
PLM4_65_b1_redo_sep16_scaffold_3754_6
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3146..3571)
DNA (426bp) protein (142aa)
Uncharacterized protein {ECO:0000313|EMBL:EXF45235.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BAY1663.;"
PLM4_65_b1_redo_sep16_scaffold_3754_7
unknown

Not on your lists

comp(3564..3950)
DNA (387bp) protein (129aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3754_8
unknown

Not on your lists

comp(3961..4413)
DNA (453bp) protein (151aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3754_9
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4518..4805)
DNA (288bp) protein (96aa)
Histone H1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I6N4_RHOVT
histone H1
Histone H1 {ECO:0000313|EMBL:ADP70681.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
PLM4_65_b1_redo_sep16_scaffold_3754_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5353..6123)
DNA (771bp) protein (257aa)
dehydrogenase Tax=Glaciibacter superstes RepID=UPI0003B4D05E
putative short-chain dehydrogenase/reductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_3754_11
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6228..7382
DNA (1155bp) protein (385aa)
Putative iron-containing alcohol dehydrogenase Tax=Tistrella mobilis (strain KA081020-065) RepID=I3THZ8_TISMK
putative iron-containing alcohol dehydrogenase
Putative iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:AFK52386.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM4_65_b1_redo_sep16_scaffold_3754_12
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7400..8509)
DNA (1110bp) protein (370aa)
Putative uncharacterized protein Tax=Sphingobium sp. SYK-6 RepID=G2IN11_9SPHN
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_65_b1_redo_sep16_scaffold_3754_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8700..9884
DNA (1185bp) protein (395aa)
Putative substrate-binding protein Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ICC7_AZOC5
substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM4_65_b1_redo_sep16_scaffold_3754_14
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10067..11086)
DNA (1020bp) protein (340aa)
Rieske (2Fe-2S) domain-containing protein Tax=Burkholderia terrae BS001 RepID=I5CVP1_9BURK
Rieske (2Fe-2S) domain-containing protein {ECO:0000313|EMBL:EIM99959.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
vanillate O-demethylase oxygenase subunit
PLM4_65_b1_redo_sep16_scaffold_3754_15
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11376..12572
DNA (1197bp) protein (399aa)
Putative substrate-binding protein Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ICC7_AZOC5
substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
PLM4_65_b1_redo_sep16_scaffold_3754_16
unknown

Not on your lists

12742..12879
DNA (138bp) protein (46aa)
ABC transporter substrate-binding protein
PLM4_65_b1_redo_sep16_scaffold_3754_17
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12986..13903
DNA (918bp) protein (306aa)
Putative branched-chain amino acid ABC transporter, permease protein Tax=Bradyrhizobium sp. ORS 375 RepID=H0SM60_9BRAD
Putative branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:CCD95287.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
putative branched-chain amino acid ABC transporter permease protein
PLM4_65_b1_redo_sep16_scaffold_3754_18
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13907..15157
DNA (1251bp) protein (417aa)
Putative branched-chain amino acid ABC transporter, permease protein Tax=Bradyrhizobium sp. STM 3843 RepID=H0TUD0_9BRAD
ABC transporter permease
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
PLM4_65_b1_redo_sep16_scaffold_3754_19
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15150..15899
DNA (750bp) protein (250aa)
ABC transporter ATP-binding protein Tax=alpha proteobacterium BAL199 RepID=A8TRN9_9PROT
branched-chain amino acid ABC transporter substrate-binding protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM4_65_b1_redo_sep16_scaffold_3754_20
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15904..16605
DNA (702bp) protein (234aa)
ABC transporter ATP-binding protein Tax=Bradyrhizobium japonicum RepID=UPI0003654159
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGT77369.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
ABC transporter ATP-binding protein
PLM4_65_b1_redo_sep16_scaffold_3754_21
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16702..17094
DNA (393bp) protein (131aa)
fadD3; AMP-binding protein (EC:2.3.1.86)
hypothetical protein Tax=Rudaea cellulosilytica RepID=UPI000370CA44
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying 21 items

View Taxonomy