ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_4321

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4321_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

1..1587
DNA (1587bp) protein (529aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XHA7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60742.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_4321_2
Loktanella vestfoldensis, Loktanella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1597..2385)
DNA (789bp) protein (263aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:EAQ05592.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EAQ05592.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Loktanella.;" source="Loktanella vestfoldensis SKA53.;"
crt; 3-hydroxybutyryl-CoA dehydratase Crt (EC:4.2.1.55)
hypothetical protein Tax=Pannonibacter phragmitetus RepID=UPI000363D4F7
PLM4_65_b1_redo_sep16_scaffold_4321_3
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2483..2953
DNA (471bp) protein (157aa)
apbA2; ketopantoate reductase ApbA (EC:1.1.1.169)
Uncharacterized protein Tax=Haloarcula RepID=Q5V6N3_HALMA
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_65_b1_redo_sep16_scaffold_4321_4
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3012..3650
DNA (639bp) protein (213aa)
Putative uncharacterized protein Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EGI7_9SPHN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM4_65_b1_redo_sep16_scaffold_4321_5
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3653..4495
DNA (843bp) protein (281aa)
hypothetical protein Tax=Amorphus coralli RepID=UPI00036D2B78
alpha/beta hydrolase fold protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_4321_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4507..5544)
DNA (1038bp) protein (346aa)
NADPH:quinone reductase (EC:1.6.5.5)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI000360ECF3
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_65_b1_redo_sep16_scaffold_4321_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5569..6873)
DNA (1305bp) protein (435aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0003136C0D
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM4_65_b1_redo_sep16_scaffold_4321_8
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6870..7328)
DNA (459bp) protein (153aa)
hypothetical protein Tax=Pannonibacter phragmitetus RepID=UPI00037B0C42
C4-dicarboxylate ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM4_65_b1_redo_sep16_scaffold_4321_9
RLO_Betaproteobacteria_68_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7357..8400)
DNA (1044bp) protein (348aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI00037E7F9D
dctP; periplasmic protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_19_curated
PLM4_65_b1_redo_sep16_scaffold_4321_10
Gluconobacter oxydans, Gluconobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8531..10204)
DNA (1674bp) protein (558aa)
hutU; urocanate hydratase HutU (EC:4.2.1.49)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter.;" source="Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans).;"
Urocanate hydratase Tax=alpha proteobacterium BAL199 RepID=A8TTI9_9PROT
PLM4_65_b1_redo_sep16_scaffold_4321_11
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10302..10931
DNA (630bp) protein (210aa)
Putative Glutathione S-transferase {ECO:0000313|EMBL:CCG40705.1}; EC=2.5.1.18 {ECO:0000313|EMBL:CCG40705.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
Putative Glutathione S-transferase Tax=Phaeospirillum molischianum DSM 120 RepID=H8FQR7_PHAMO
glutathione S-transferase
PLM4_65_b1_redo_sep16_scaffold_4321_12
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11108..12652)
DNA (1545bp) protein (515aa)
hypothetical protein Tax=Pusillimonas noertemannii RepID=UPI0003101F47
AMP-dependent synthetase and ligase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_4321_13
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12663..13607)
DNA (945bp) protein (315aa)
hypothetical protein Tax=Azoarcus toluclasticus RepID=UPI000380CB16
metF; methylenetetrahydrofolate reductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_4321_14
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13823..14923
DNA (1101bp) protein (367aa)
Putative uncharacterized protein Tax=Sphingobium sp. SYK-6 RepID=G2IN11_9SPHN
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM4_65_b1_redo_sep16_scaffold_4321_15
unknown

Not on your lists

comp(14930..15154)
DNA (225bp) protein (75aa)

This feature has no annotations

Displaying 15 items

View Taxonomy