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PLM4_65_b1_redo_sep16_scaffold_2305

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2305_1
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

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1..153
DNA (153bp) protein (51aa)
serine--glyoxylate aminotransferase (EC:2.6.1.45)
Serine--glyoxylate aminotransferase Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HL48_ACHXA
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_65_b1_redo_sep16_scaffold_2305_2
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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197..1177
DNA (981bp) protein (327aa)
Uncharacterized protein Tax=Oceanibaculum indicum P24 RepID=K2JUH2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKE78127.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2305_3
BJP_08E140C01_Roseovarius_63_250, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1253..1783
DNA (531bp) protein (177aa)
Uncharacterized protein Tax=Roseobacter sp. AzwK-3b RepID=A6FK85_9RHOB
dctQ1; TRAP dicarboxylate transporter subunit DctQ
Tax=BJP_08E140C01_Roseovarius_63_250
PLM4_65_b1_redo_sep16_scaffold_2305_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1780..3069
DNA (1290bp) protein (430aa)
TRAP-type C4-dicarboxylate transport system, large permease component Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I2H6_9RHIZ
TRAP-type C4-dicarboxylate transport system, large permease component {ECO:0000313|EMBL:EHK52886.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2305_5
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3066..3851
DNA (786bp) protein (262aa)
Enoyl-CoA hydratase Tax=Pusillimonas sp. (strain T7-7) RepID=F4GWQ6_PUSST
enoyl-CoA hydratase
Enoyl-CoA hydratase {ECO:0000313|EMBL:AEC20110.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
PLM4_65_b1_redo_sep16_scaffold_2305_6

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4047..5258
DNA (1212bp) protein (404aa)
L-carnitine dehydratase/bile acid-inducible protein F Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YGG0_MOBAS
Uncharacterized protein {ECO:0000313|EMBL:KKN89179.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
L-carnitine dehydratase/bile acid-inducible protein F
PLM4_65_b1_redo_sep16_scaffold_2305_7
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5500..6849
DNA (1350bp) protein (450aa)
ATP-dependent RNA helicase Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z304_AZOL4
DEAD/DEAH box helicase {ECO:0000313|EMBL:KJB95232.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
rhlE1; ATP-dependent RNA helicase
PLM4_65_b1_redo_sep16_scaffold_2305_8
unknown

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comp(6846..7301)
DNA (456bp) protein (152aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2305_9
Thioalkalivibrio thiocyanoxidans, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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7450..9072
DNA (1623bp) protein (541aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037BD025
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHF00046.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio thiocyanoxidans ARh 4.;"
PLM4_65_b1_redo_sep16_scaffold_2305_10
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9258..10844
DNA (1587bp) protein (529aa)
4-hydroxyphenylacetate 3-hydroxylase Tax=Streptomyces ghanaensis ATCC 14672 RepID=D5ZWZ7_9ACTO
Pyoverdin chromophore biosynthetic protein pvcC {ECO:0000313|EMBL:KGT75331.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
4-hydroxyphenylacetate 3-hydroxylase
PLM4_65_b1_redo_sep16_scaffold_2305_11
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10887..12215
DNA (1329bp) protein (443aa)
Putative ABC transporter substrate-binding protein Tax=Rhizobium mesoamericanum STM3625 RepID=K0PHV1_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGT75591.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
ABC transporter substrate-binding protein
PLM4_65_b1_redo_sep16_scaffold_2305_12
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12335..13054
DNA (720bp) protein (240aa)
hypothetical protein Tax=Amorphus coralli RepID=UPI00037CD0D7
ABC transporter ATPase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM4_65_b1_redo_sep16_scaffold_2305_13
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13064..13765
DNA (702bp) protein (234aa)
High-affinity branched-chain amino acid transport protein (ABC superfamily, atp_bind) Tax=Bradyrhizobium sp. ORS 285 RepID=H0RRZ1_9BRAD
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGT75334.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
livF; high-affinity branched-chain amino acid ABC transporter ATP-binding protein
PLM4_65_b1_redo_sep16_scaffold_2305_14
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13769..14635
DNA (867bp) protein (289aa)
Putative amino acid or sugar ABC transport system, permease protein Tax=Labrenzia alexandrii DFL-11 RepID=B9QUK5_9RHOB
ABC transporter permease {ECO:0000313|EMBL:KGT75335.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
ABC transporter permease
PLM4_65_b1_redo_sep16_scaffold_2305_15
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14641..15738
DNA (1098bp) protein (366aa)
hypothetical protein Tax=Amorphus coralli RepID=UPI000371CF97
ABC transporter permease {ECO:0000313|EMBL:KGT75336.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
branched-chain amino acid ABC transporter permease
PLM4_65_b1_redo_sep16_scaffold_2305_16
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15830..16975)
DNA (1146bp) protein (382aa)
hypothetical protein Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002ED2137
vitamin-B12 independent methionine synthase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
PLM4_65_b1_redo_sep16_scaffold_2305_17
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17250..18164
DNA (915bp) protein (305aa)
Metapyrocatechase domain protein Tax=Burkholderiales RepID=E3HXQ1_ACHXA
glyoxalase/Bleomycin resistance/Dioxygenase superfamily protein
Putative dioxygenase {ECO:0000313|EMBL:ABE31833.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
PLM4_65_b1_redo_sep16_scaffold_2305_18
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18204..20366)
DNA (2163bp) protein (721aa)
Glycoside hydrolase family 3 domain protein Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I7J4_RHOVT
glycoside hydrolase
Glycoside hydrolase family 3 domain protein {ECO:0000313|EMBL:ADP71913.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
PLM4_65_b1_redo_sep16_scaffold_2305_19
unknown

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20762..20902
DNA (141bp) protein (47aa)

This feature has no annotations

Displaying 19 items

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