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PLM4_65_b1_redo_sep16_scaffold_2549

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2549_1
Thiobacillus prosperus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..395)
DNA (393bp) protein (131aa)
ABC transporter Tax=Nitratireductor pacificus pht-3B RepID=K2LMN0_9RHIZ
LivF, ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:KFZ90050.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="Thiobacillus prosperus.;"
natE; ABC-type neutral amino acid uptake sytem ATPase component NatE
PLM4_65_b1_redo_sep16_scaffold_2549_2
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(388..1155)
DNA (768bp) protein (256aa)
Candidate ABC type branched chain amino acid transport system, ATP-binding component Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XXN6_RAMTT
Branched-chain amino acid ABC transporter ATPase {ECO:0000313|EMBL:KDP87718.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
branched chain amino acid ABC transporter ATP-binding protein
PLM4_65_b1_redo_sep16_scaffold_2549_3
Agaricus bisporus, Agaricus, Agaricales, Agaricomycetidae, Basidiomycota, Fungi

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1250..1606
DNA (357bp) protein (119aa)
Uncharacterized protein Tax=Agaricus bisporus var. bisporus (strain H97 / ATCC MYA-4626 / FGSC 10389) RepID=K9HEG4_AGABB
Uncharacterized protein {ECO:0000313|EMBL:EKV44206.1}; species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Agaricaceae; Agaricus.;" source="Agaricus bisporus var. bisporus (strain H97 / ATCC MYA-4626 / FGSC; 10389) (White button mushroom).;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2549_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1730..2773
DNA (1044bp) protein (348aa)
Aldo/keto reductase Tax=Agrobacterium albertimagni AOL15 RepID=K2Q992_9RHIZ
Variovorax paradoxus strain MEDvA23 contig_83, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22549.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
aldo/keto reductase
PLM4_65_b1_redo_sep16_scaffold_2549_5
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2859..4130
DNA (1272bp) protein (424aa)
UPI0003CF5114 related cluster Tax=unknown RepID=UPI0003CF5114
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESW87542.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ABC-type branched-chain amino acid transport system, periplasmic component
PLM4_65_b1_redo_sep16_scaffold_2549_6
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4154..5893)
DNA (1740bp) protein (580aa)
5-oxoprolinase (ATP-hydrolyzing) Tax=Pandoraea sp. SD6-2 RepID=R7X3E1_9BURK
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:EON14051.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
5-oxoprolinase (ATP-hydrolyzing)
PLM4_65_b1_redo_sep16_scaffold_2549_7
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5890..7983)
DNA (2094bp) protein (698aa)
Hydantoinase/oxoprolinase {ECO:0000313|EMBL:EFH09553.1}; EC=3.5.2.9 {ECO:0000313|EMBL:EFH09553.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI000371DC1F
hydantoinase/oxoprolinase family protein
PLM4_65_b1_redo_sep16_scaffold_2549_8
Burkholderia sp. USM B20, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8107..9117
DNA (1011bp) protein (337aa)
hypothetical protein Tax=Ralstonia solanacearum RepID=UPI0002F829DE
Uncharacterized protein {ECO:0000313|EMBL:KJE52996.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. USM B20.;"
araC-like ligand binding domain protein
PLM4_65_b1_redo_sep16_scaffold_2549_9
Nitrososphaera viennensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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9122..10063
DNA (942bp) protein (314aa)
GCN5-related N-acetyltransferase Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GPC7_SPHAL
GCN5-related N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AIC15853.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Nitrososphaera viennensis EN76.;"
PLM4_65_b1_redo_sep16_scaffold_2549_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10129..10887
DNA (759bp) protein (253aa)
Short-chain dehydrogenase bin=GWA2_Methylomirabilis_73_35 species=Oceanibaculum indicum genus=Oceanibaculum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain alcohol dehydrogenase
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_b1_redo_sep16_scaffold_2549_11
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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11114..12181
DNA (1068bp) protein (356aa)
C4-dicarboxylate-binding periplasmic protein bin=GWC2_Syntrophus__56_31 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
dctP; C4-dicarboxylate-binding periplasmic protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_b1_redo_sep16_scaffold_2549_12
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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12327..12887
DNA (561bp) protein (187aa)
Putative uncharacterized protein bin=GWC2_Syntrophus__56_31 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_65_b1_redo_sep16_scaffold_2549_13
R_Gammaproteobacteria_61_13, Gammaproteobacteria, Proteobacteria, Bacteria

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12891..14234
DNA (1344bp) protein (448aa)
Putative uncharacterized protein bin=GWC2_Syntrophus__56_31 species=Maritimibacter alkaliphilus genus=Maritimibacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
TRAP C4-dicarboxylate transport system permease DctM
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_61_13_curated
PLM4_65_b1_redo_sep16_scaffold_2549_14
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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14297..15541
DNA (1245bp) protein (415aa)
Uncharacterized protein Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2J516_NOSP7
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM4_65_b1_redo_sep16_scaffold_2549_15
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

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15583..16791
DNA (1209bp) protein (403aa)
peptidase M24 bin=bin9_gal15 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=bin9_gal15 organism_group=GAL15
peptidase M24
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM4_65_b1_redo_sep16_scaffold_2549_16
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16805..17731)
DNA (927bp) protein (309aa)
Lipoprotein Tax=Pseudomonas sp. CFII64 RepID=S6GWZ5_9PSED
extracellular solute-binding protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
PLM4_65_b1_redo_sep16_scaffold_2549_17
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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17877..18821
DNA (945bp) protein (315aa)
2-keto-4-pentenoate hydratase Tax=Cupriavidus basilensis OR16 RepID=H1S4T5_9BURK
fumarylacetoacetate (FAA) hydrolase family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM4_65_b1_redo_sep16_scaffold_2549_18
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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18882..19403
DNA (522bp) protein (174aa)
Glyoxalase/bleomycin resistance protein/dioxygenase Tax=Cystobacter fuscus DSM 2262 RepID=S9QUQ6_9DELT
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EPX65054.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
glyoxalase/bleomycin resistance protein/dioxygenase
PLM4_65_b1_redo_sep16_scaffold_2549_19
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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19549..19842
DNA (294bp) protein (98aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily Tax=Rhizobium sp. CF080 RepID=J2JR38_9RHIZ
2-hydroxymuconic semialdehyde hydrolase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Displaying 19 items

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