ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_3225_19

Organism: PLM4_65_b1_sep16_Alphaproteobacteria_Rhodospirillales_68_15

near complete RP 46 / 55 MC: 1 BSCG 46 / 51 MC: 2 ASCG 10 / 38
Location: comp(14108..14992)

Top 3 Functional Annotations

Value Algorithm Source
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.4
  • Coverage: 279.0
  • Bit_score: 350
  • Evalue 1.60e-93
hypothetical protein Tax=Novispirillum itersonii RepID=UPI00036689DD similarity UNIREF
DB: UNIREF100
  • Identity: 63.6
  • Coverage: 286.0
  • Bit_score: 357
  • Evalue 7.00e-96
shikimate dehydrogenase similarity KEGG
DB: KEGG
  • Identity: 60.9
  • Coverage: 276.0
  • Bit_score: 346
  • Evalue 6.00e-93

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Caenispirillum salinarum → Caenispirillum → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 885
ATGACGATCGACGGCAAGACCCGTTTGGCCGGCTTGCTCGGCTGGCCGGTGGCGCATTCGCGCTCGCCGCGCCTGCACAATTACTGGCTGCAGCACTACGGCATCAACGGCGCCTATCTGCCGCTGCCGGTCGAGGCCGCGCATTTCGCCGAAGCGGTGCGGGGCTTGGCGCGCGTGGGCTTCGCCGGCGCCAACGTCACCGTGCCGCACAAGGAGGCGGCCTTCGCGATTTGCGACCGCGTCGACGACAGTGCCAAGAAAGTGGGCGCCGTCAACACGCTGATCTTCGGCGAAGCCGGCGAAATCGCGGGCAGCAACACCGATGGCTTCGGCCTCATCGAGGCGCTCCGCGCCGCCGTGAAGCACTTCGATGCGCGTCACGGGCCCGCCGTGGTGCTGGGCGCCGGCGGCAGCGCGCGCGCCGTGGTGCAGGCCTTGACCGAAGCGGGCGCGCCCGAGATCCGGCTCGTCAACCGCACGCCCGAGCGCGCCGAACGCCTCGCCGCCGAGCTCGGAGGACCGGTTCGCCCGACCCCTTGGAGCGAGGCCGCCACCGCCATGGAAGGCGCGGCACTGCTGGTCAACACGACGACGCTCGGCATGAAGGGACAGCCGCCGCTGGCGCTCGACCTCGCGCCGCTGCCGGCGACCGCGGTCGTCAACGACATCGTCTACACGCCGCTCGAAACCGGGCTGCTGCGCGCGGCGCGCCGGCGCGGCAACCCGGTGGTCGACGGGCTCGGCATGCTGCTGCACCAGGCGCGCGGCGGGTTCCGCGCCTGGTTCGGGCGCGACCCCGAGGTGACCGAGGCGCTGCGCCGCCATATCGCCGCCGATCTGCTCGAAGAAGCGCAACGGGACCGCGCCGGGGCCGAGCCGGCATGA
PROTEIN sequence
Length: 295
MTIDGKTRLAGLLGWPVAHSRSPRLHNYWLQHYGINGAYLPLPVEAAHFAEAVRGLARVGFAGANVTVPHKEAAFAICDRVDDSAKKVGAVNTLIFGEAGEIAGSNTDGFGLIEALRAAVKHFDARHGPAVVLGAGGSARAVVQALTEAGAPEIRLVNRTPERAERLAAELGGPVRPTPWSEAATAMEGAALLVNTTTLGMKGQPPLALDLAPLPATAVVNDIVYTPLETGLLRAARRRGNPVVDGLGMLLHQARGGFRAWFGRDPEVTEALRRHIAADLLEEAQRDRAGAEPA*