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PLM4_65_b1_redo_sep16_scaffold_3225

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3225_1
Magnetospira sp. QH-2, Magnetospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..686)
DNA (684bp) protein (228aa)
hisF; Imidazole glycerol phosphate synthase subunit hisF (EC:4.1.3.-)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013, ECO:0000313|EMBL:CCQ75643.1};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospira.;" source="Magnetospira sp. QH-2.;"
Imidazole glycerol phosphate synthase subunit HisF Tax=alpha proteobacterium BAL199 RepID=A8U091_9PROT
PLM4_65_b1_redo_sep16_scaffold_3225_2
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(688..1407)
DNA (720bp) protein (240aa)
hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase (EC:5.3.1.16)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase Tax=Magnetospirillum gryphiswaldense MSR-1 v2 RepID=V6F5P7_9PROT
PLM4_65_b1_redo_sep16_scaffold_3225_3
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1520..2161)
DNA (642bp) protein (214aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
Imidazole glycerol phosphate synthase subunit HisH Tax=Oceanibaculum indicum P24 RepID=K2J5R3_9PROT
hisH; amidotransferase
PLM4_65_b1_redo_sep16_scaffold_3225_4
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2183..2584)
DNA (402bp) protein (134aa)
Uncharacterized protein Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSH3_PARL1
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
PLM4_65_b1_redo_sep16_scaffold_3225_5
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2593..3246)
DNA (654bp) protein (218aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Imidazoleglycerol-phosphate dehydratase Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TR08_TISMK
hisB; imidazoleglycerol-phosphate dehydratase
PLM4_65_b1_redo_sep16_scaffold_3225_6
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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3538..4188
DNA (651bp) protein (217aa)
Mitochondrial import inner membrane translocase Tax=Azospirillum sp. (strain B510) RepID=D3NYP6_AZOS1
mitochondrial import inner membrane translocase
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM4_65_b1_redo_sep16_scaffold_3225_7
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4190..5296
DNA (1107bp) protein (369aa)
Murein degrading transglycosylase protein Tax=Rhodospirillum rubrum RepID=G2TEV3_RHORU
murein degrading transglycosylase protein
Murein degrading transglycosylase protein {ECO:0000313|EMBL:ABC24401.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
PLM4_65_b1_redo_sep16_scaffold_3225_8
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5514..6305
DNA (792bp) protein (264aa)
Putative Fe-S oxidoreductase Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TR34_TISMK
Fe-S oxidoreductase {ECO:0000313|EMBL:EWY40591.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
putative Fe-S oxidoreductase
PLM4_65_b1_redo_sep16_scaffold_3225_9
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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6302..7744
DNA (1443bp) protein (481aa)
(4Fe-4S) cluster-containing protein Tax=Microvirga sp. WSM3557 RepID=I4YUY3_9RHIZ
(Fe-S)-binding protein {ECO:0000313|EMBL:KJB95800.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
iron-sulfur cluster binding protein
PLM4_65_b1_redo_sep16_scaffold_3225_10
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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7860..8579
DNA (720bp) protein (240aa)
Uncharacterized protein Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TR32_TISMK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK55220.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
PLM4_65_b1_redo_sep16_scaffold_3225_11
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8554..9282
DNA (729bp) protein (243aa)
Smr protein Tax=Azospirillum sp. (strain B510) RepID=D3NYN3_AZOS1
Uncharacterized protein {ECO:0000313|EMBL:KJV08272.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
mutS2; smr protein
PLM4_65_b1_redo_sep16_scaffold_3225_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9294..9713)
DNA (420bp) protein (140aa)
hypothetical protein Tax=Lamprocystis purpurea RepID=UPI00037987B4
PilT protein domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
PLM4_65_b1_redo_sep16_scaffold_3225_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9710..9958)
DNA (249bp) protein (83aa)
hypothetical protein Tax=Lamprocystis purpurea RepID=UPI00037CFC49
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM4_65_b1_redo_sep16_scaffold_3225_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10038..11390)
DNA (1353bp) protein (451aa)
ATP-dependent protease ATPase subunit HslU Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=HSLU_PARL1
hslU; ATP-dependent protease ATP-binding subunit HslU
ATP-dependent protease ATPase subunit HslU {ECO:0000255|HAMAP-Rule:MF_00249}; Unfoldase HslU {ECO:0000255|HAMAP-Rule:MF_00249}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
PLM4_65_b1_redo_sep16_scaffold_3225_15
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11502..12050)
DNA (549bp) protein (183aa)
ATP-dependent protease subunit HslV (EC:3.4.25.1)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
ATP-dependent protease subunit HslV Tax=Rhodospirillum rubrum RepID=G2TEU5_RHORU
PLM4_65_b1_redo_sep16_scaffold_3225_16
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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12178..12684
DNA (507bp) protein (169aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI0003608BE8
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
secB; Preprotein translocase subunit SecB
PLM4_65_b1_redo_sep16_scaffold_3225_17
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12694..13395)
DNA (702bp) protein (234aa)
DNA polymerase III subunit epsilon (EC:2.7.7.7)
DNA polymerase III, epsilon subunit {ECO:0000313|EMBL:ABC24405.1}; EC=2.7.7.7 {ECO:0000313|EMBL:ABC24405.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
DNA polymerase III, subunit epsilon Tax=Rhodospirillum rubrum RepID=G2TEV7_RHORU
PLM4_65_b1_redo_sep16_scaffold_3225_18
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13437..14111)
DNA (675bp) protein (225aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase Tax=Oceanibaculum indicum P24 RepID=K2JSM9_9PROT
PLM4_65_b1_redo_sep16_scaffold_3225_19
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14108..14992)
DNA (885bp) protein (295aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
hypothetical protein Tax=Novispirillum itersonii RepID=UPI00036689DD
shikimate dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_3225_20
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14989..15618)
DNA (630bp) protein (210aa)
Maf-like protein AZOBR_10391 Tax=Azospirillum brasilense Sp245 RepID=G8AG69_AZOBR
putative septum formation inhibitor protein (Maf-like)
Maf-like protein AZOBR_10391 {ECO:0000256|HAMAP-Rule:MF_00528}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
PLM4_65_b1_redo_sep16_scaffold_3225_21
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15615..16457)
DNA (843bp) protein (281aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Putative pyruvate, phosphate dikinase regulatory protein Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IV47_RHOCS
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3225_22
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16876..17790
DNA (915bp) protein (305aa)
Uroporphyrinogen decarboxylase {ECO:0000255|HAMAP-Rule:MF_00218}; Short=UPD {ECO:0000255|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000255|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000255|HAMAP-Rule:MF_00218};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
Uroporphyrinogen decarboxylase Tax=Rhodospirillum rubrum RepID=DCUP_RHORT
uroporphyrinogen decarboxylase
Displaying 22 items

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