ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_3731

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3731_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


1..342
DNA (342bp) protein (114aa)
rpsS; ribosomal protein S19; K02965 small subunit ribosomal protein S19 bin=CNBR_ACIDO species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
30S ribosomal protein s19
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


353..715
DNA (363bp) protein (121aa)
50S ribosomal protein L22 bin=CNBR_ACIDO species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplV; 50S ribosomal protein L22
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


724..1374
DNA (651bp) protein (217aa)
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
30S ribosomal protein S3
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


1387..1803
DNA (417bp) protein (139aa)
50S ribosomal protein L16 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI0003774F17
rplP; 50S ribosomal protein L16
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


1803..1997
DNA (195bp) protein (65aa)
50S ribosomal protein L29
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


1994..2299
DNA (306bp) protein (102aa)
30S ribosomal protein S17 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKZ1_THEM7
30S ribosomal protein S17
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


2318..2692
DNA (375bp) protein (125aa)
50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 bin=CNBR_ACIDO species=Terriglobus saanensis genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplN; 50S ribosomal protein L14
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


2697..3050
DNA (354bp) protein (118aa)
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 bin=CNBR_ACIDO species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplX; 50S ribosomal protein L24
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


3047..3607
DNA (561bp) protein (187aa)
50S ribosomal protein L5 Tax=Desmospora sp. 8437 RepID=F5SIC6_9BACL
50S ribosomal protein L5
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


3622..3807
DNA (186bp) protein (62aa)
30S ribosomal protein S14 type Z Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKI1_9BACT
rpsZ; 30S ribosomal protein S14
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


3827..4225
DNA (399bp) protein (133aa)
30S ribosomal protein S8 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037E56F9
rpsH; 30S ribosomal protein S8
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists


4235..4783
DNA (549bp) protein (183aa)
50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 bin=CNBR_ACIDO species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rplF; 50S ribosomal protein L6
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_3731_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


4844..5209
DNA (366bp) protein (122aa)
50S ribosomal protein L18 Tax=Solibacter usitatus (strain Ellin6076) RepID=RL18_SOLUE
50S ribosomal protein L18
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


5235..5801
DNA (567bp) protein (189aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpsE; 30S ribosomal protein S5
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


5818..6024
DNA (207bp) protein (69aa)
50S ribosomal protein L30 Tax=zeta proteobacterium SCGC AB-137-C09 RepID=UPI00035E9769
50S ribosomal protein L30
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_16
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


6100..6495
DNA (396bp) protein (132aa)
50S ribosomal protein L15 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LGT2_ACEWD
rplO; 50S ribosomal protein L15
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


6504..7907
DNA (1404bp) protein (468aa)
protein translocase subunit SecY/sec61 alpha; K03076 preprotein translocase subunit SecY bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein translocase subunit SecY/sec61 alpha
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

7894..8577
DNA (684bp) protein (228aa)
adenylate kinase (EC:2.7.4.3)
Adenylate kinase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q151_9FIRM
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

8574..9353
DNA (780bp) protein (260aa)
methionine aminopeptidase Tax=Alicyclobacillus pohliae RepID=UPI00037DAA45
methionine aminopeptidase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

9346..9591
DNA (246bp) protein (82aa)
Translation initiation factor IF-1 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=B8D0T2_HALOH
translation initiation factor IF-1
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists


9728..10099
DNA (372bp) protein (124aa)
30S ribosomal protein S13 Tax=Thermoanaerobacter RepID=RS13_THEP3
rpsM; 30S ribosomal protein S13
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_3731_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


10110..10511
DNA (402bp) protein (134aa)
30S ribosomal protein S11 Tax=Koribacter versatilis (strain Ellin345) RepID=RS11_KORVE
30S ribosomal protein S11
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_23
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


10526..11161
DNA (636bp) protein (212aa)
rpsD; 30S ribosomal protein S4 bin=bin3_NC10 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
rpsD; 30S ribosomal protein S4
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_24
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

11211..12206
DNA (996bp) protein (332aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6) bin=CNBR_ACIDO species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA-directed RNA polymerase subunit alpha
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_25
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


12229..12726
DNA (498bp) protein (166aa)
50S ribosomal protein L17 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=RL17_ANAD2
rplQ; 50S ribosomal protein L17
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3731_26
Caenorhabditis japonica, Caenorhabditis, Rhabditida, Chromadorea, Nematoda, Metazoa

Not on your lists

comp(12820..14355)
DNA (1536bp) protein (512aa)
Protein-tyrosine-phosphatase {ECO:0000256|SAAS:SAAS00140653}; EC=3.1.3.48 {ECO:0000256|SAAS:SAAS00140653};; species="Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis.;" source="Caenorhabditis japonica.;"
Uncharacterized protein Tax=Caenorhabditis japonica RepID=K7H6Q2_CAEJA
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3731_27
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(14365..16317)
DNA (1953bp) protein (651aa)
Elongation factor EF-G Tax=uncultured Acidobacteria bacterium RepID=H5S9F7_9BACT
translation elongation factor G
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 27 items

View Taxonomy