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PLM4_65_b1_redo_sep16_scaffold_3790

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3790_1
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

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comp(3..593)
DNA (591bp) protein (197aa)
Hydrogenase, membrane subunit 2-like protein bin=GWC2_Ignavibacteria_56_12 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Ignavibacteria_56_12 organism_group=Ignavibacteria organism_desc=Larger genome
hydrogenase 4 membrane component (E)
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
PLM4_65_b1_redo_sep16_scaffold_3790_2
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(603..1550)
DNA (948bp) protein (316aa)
Putative Formate hydrogenlyase, membrane subunit Tax=Candidatus Nitrospira defluvii RepID=D8P8U5_9BACT
putative formate hydrogenlyase, membrane subunit
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_3790_3
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(1547..3568)
DNA (2022bp) protein (674aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
NADH dehydrogenase (Quinone) Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZSE3_OPITP
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_3790_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(3565..5595)
DNA (2031bp) protein (677aa)
NADH dehydrogenase (quinone) (EC:1.6.99.5)
Uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_3790_5
R_Elusimicrobia_59_12, Elusimicrobia, Bacteria

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comp(5650..6114)
DNA (465bp) protein (155aa)
hypothetical protein; K07164 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_59_12_curated
PLM4_65_b1_redo_sep16_scaffold_3790_6
unknown

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comp(6111..6560)
DNA (450bp) protein (150aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3790_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6744..8129)
DNA (1386bp) protein (462aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains bin=GWA2_Deltaproteo_65_63 species=Spirochaeta africana genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
acetoacetate metabolism regulatory protein AtoC
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM4_65_b1_redo_sep16_scaffold_3790_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(8129..8848)
DNA (720bp) protein (240aa)
Integral membrane sensor signal transduction histidine kinase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
signal transduction histidine kinase
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_b1_redo_sep16_scaffold_3790_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(8859..9575)
DNA (717bp) protein (239aa)
Uncharacterized protein bin=GWB2_Geobacter-like_52_12 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Geobacter-like_52_12 organism_group=Deltaproteobacteria organism_desc=Good
protein of unknown function DUF72
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3790_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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9664..10476
DNA (813bp) protein (271aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_3790_11
RBG_13_Chloroflexi_53_26_curated, Chloroflexi, Bacteria

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comp(10478..11959)
DNA (1482bp) protein (494aa)
add2; Aminodeoxyfutalosine deaminase (EC:3.5.4.-)
Adenosine deaminase-related growth factor Tax=Dictyostelium fasciculatum (strain SH3) RepID=F4PNZ1_DICFS
Tax=RBG_13_Chloroflexi_53_26_curated
PLM4_65_b1_redo_sep16_scaffold_3790_12
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

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comp(11941..13332)
DNA (1392bp) protein (464aa)
Argininosuccinate lyase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=ARLY_ROSCS
argininosuccinate lyase
Tax=CG_Anaero_02
PLM4_65_b1_redo_sep16_scaffold_3790_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(13399..14583)
DNA (1185bp) protein (395aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R9D9_AMMDK
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3790_14
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(14580..15878)
DNA (1299bp) protein (433aa)
argininosuccinate synthase (EC:6.3.4.5)
Argininosuccinate synthase {ECO:0000255|HAMAP-Rule:MF_00005}; EC=6.3.4.5 {ECO:0000255|HAMAP-Rule:MF_00005};; Citrulline--aspartate ligase {ECO:0000255|HAMAP-Rule:MF_00005}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
Argininosuccinate synthase Tax=Roseiflexus sp. (strain RS-1) RepID=ASSY_ROSS1
PLM4_65_b1_redo_sep16_scaffold_3790_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(15903..16199)
DNA (297bp) protein (99aa)
acetylornithine aminotransferase (EC:2.6.1.11)
acetylornithine aminotransferase Tax=Brevibacillus laterosporus RepID=UPI0003812253
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 15 items

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