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PLM4_65_b1_redo_sep16_scaffold_3834

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3834_1
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(535..966)
DNA (432bp) protein (144aa)
anti-sigma regulatory factor (EC:2.7.11.1) bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
anti-sigma regulatory factor (EC:2.7.11.1)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_3834_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1042..3612)
DNA (2571bp) protein (857aa)
amylo-alpha-16-glucosidase
Amylo-alpha-16-glucosidase {ECO:0000313|EMBL:AHG91625.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
PLM4_65_b1_redo_sep16_scaffold_3834_3
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3667..4938
DNA (1272bp) protein (424aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
3-phosphoshikimate 1-carboxyvinyltransferase Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SM15_THEM7
PLM4_65_b1_redo_sep16_scaffold_3834_4
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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4931..5446
DNA (516bp) protein (172aa)
Shikimate kinase (EC:2.7.1.71 4.2.3.4)
Shikimate kinase Tax=Mitsuokella multacida DSM 20544 RepID=C9KPR9_9FIRM
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_65_b1_redo_sep16_scaffold_3834_5
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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5443..6183
DNA (741bp) protein (247aa)
metallophosphoesterase bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
metallophosphoesterase
Tax=RBG_13_OP8X_37_8_curated
PLM4_65_b1_redo_sep16_scaffold_3834_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(6202..8103)
DNA (1902bp) protein (634aa)
RHS repeat-associated core domain protein Tax=Streptomyces griseus XylebKG-1 RepID=G0PXM8_STRGR
white-brown complex-like protein25
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3834_7
Eimeria tenella, Eimeria, Eucoccidiorida, Coccidia, Apicomplexa, Eukaryota

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comp(8182..9420)
DNA (1239bp) protein (413aa)
Uncharacterized protein (Fragment) Tax=Eimeria tenella RepID=U6KYS8_EIMTE
Uncharacterized protein {ECO:0000313|EMBL:CDJ40660.1}; Flags: Fragment;; species="Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Eimeriidae; Eimeria.;" source="Eimeria tenella (Coccidian parasite).;"
PLM4_65_b1_redo_sep16_scaffold_3834_8
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(9417..9998)
DNA (582bp) protein (194aa)
Maf-like protein D187_006089 Tax=Cystobacter fuscus DSM 2262 RepID=S9PH77_9DELT
Maf-like protein PYK22_01676 {ECO:0000256|HAMAP-Rule:MF_00528}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
maf protein
PLM4_65_b1_redo_sep16_scaffold_3834_9
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

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comp(10004..10837)
DNA (834bp) protein (278aa)
hypothetical protein Tax=Microbacterium sp. 292MF RepID=UPI0003791DDD
Histidine kinase {ECO:0000313|EMBL:KIF32514.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
two component transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_3834_10
unknown

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10905..11405
DNA (501bp) protein (167aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3834_11
unknown

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comp(11345..11458)
DNA (114bp) protein (38aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3834_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11466..11705)
DNA (240bp) protein (80aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3834_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11802..12206)
DNA (405bp) protein (135aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3834_14
unknown

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12229..12570
DNA (342bp) protein (114aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3834_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


12851..13942
DNA (1092bp) protein (364aa)
Protein RecA Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F677_ACIC5
recA; recA protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3834_trna_1
unknown

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14323..14402
DNA (80bp)
transferRNA Phe
PLM4_65_b1_redo_sep16_scaffold_3834_16
Neosynechococcus sphagnicola, Neosynechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

14492..15304
DNA (813bp) protein (271aa)
Uncharacterized protein {ECO:0000313|EMBL:KGF73586.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Neosynechococcus.;" source="Neosynechococcus sphagnicola sy1.;"
PLM4_65_b1_redo_sep16_scaffold_3834_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(15476..16399)
DNA (924bp) protein (308aa)
hypothetical protein, partial Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036B60B8
pyrrolo-quinoline quinone repeat-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Displaying 18 items

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