ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_3921

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3921_1
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

292..486
DNA (195bp) protein (65aa)
eutN, carboxysome associated protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM4_65_b1_redo_sep16_scaffold_3921_2
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(491..1273)
DNA (783bp) protein (261aa)
tpiA; triosephosphate isomerase; K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
tpiA; triosephosphate isomerase
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_3921_3
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

1571..1831
DNA (261bp) protein (87aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_3921_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1835..4318)
DNA (2484bp) protein (828aa)
Glycoside hydrolase family 9 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VNJ4_CAUST
glycoside hydrolase family 9
Glycoside hydrolase family 9 {ECO:0000313|EMBL:AHG92045.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_3921_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

4607..5152
DNA (546bp) protein (182aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P30_SOLUE
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABJ88590.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_3921_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

5149..7779
DNA (2631bp) protein (877aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000361E422
FecR protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_3921_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

7830..8738
DNA (909bp) protein (303aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037E5842
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABJ88588.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_3921_8
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

8719..9369
DNA (651bp) protein (217aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P33_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ88587.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_3921_9
unknown

Not on your lists

9324..9545
DNA (222bp) protein (74aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3921_10
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

9542..10489
DNA (948bp) protein (316aa)
ABC transporter related Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P34_SOLUE
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABJ88586.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_3921_11
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

10489..11298
DNA (810bp) protein (270aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00035C4292
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ88585.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_3921_12
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(11312..12712)
DNA (1401bp) protein (467aa)
pyrrolo-quinoline quinone Tax=Schlesneria paludicola RepID=UPI00029A78E1
Pyrrolo-quinoline quinone
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_3921_13
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

12814..14454
DNA (1641bp) protein (547aa)
L-lactate transport Tax=Pedosphaera parvula Ellin514 RepID=B9XFH6_9BACT
L-lactate transport {ECO:0000313|EMBL:EEF61340.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
lactate transporter
PLM4_65_b1_redo_sep16_scaffold_3921_14
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14517..14852
DNA (336bp) protein (112aa)
Cyclase family protein Tax=alpha proteobacterium BAL199 PF2_9PROT">RepID=A8TPF2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:ETX08548.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
cyclase
PLM4_65_b1_redo_sep16_scaffold_3921_15
Amborella trichopoda, Amborella, Amborellales, Streptophyta, Viridiplantae

Not on your lists

comp(14864..15925)
DNA (1062bp) protein (354aa)
Uncharacterized protein Tax=Ilumatobacter coccineus YM16-304 RepID=M5AH46_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:ERN12351.1}; species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella.;" source="Amborella trichopoda.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3921_16
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(16053..16388)
DNA (336bp) protein (112aa)
Serine/threonine protein kinase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LLH0_CHLTF
serine/threonine protein kinase
Serine/threonine protein kinase {ECO:0000313|EMBL:AEP13445.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
Displaying 16 items

View Taxonomy