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PLM4_65_b1_redo_sep16_scaffold_411

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_411_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3..563)
DNA (561bp) protein (187aa)
Putative dTDP-Rha:alpha-D-GlcNAc-pyrophosphate polyprenol, alpha-3-L-rhamnosyltransferase Tax=Nitrospina gracilis 3/211 RepID=M1Z9D1_9BACT bin=16ft_combo_ws3_JS1 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
family 2 glycosyl transferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_411_2
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(560..1681)
DNA (1122bp) protein (374aa)
group 1 glycosyl transferase bin=CNBR_ACIDO species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
glycosyltransferase WbpY
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_411_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(1671..2783)
DNA (1113bp) protein (371aa)
group 1 glycosyl transferase bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_411_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2848..4146
DNA (1299bp) protein (433aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_411_5
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

4143..4871
DNA (729bp) protein (243aa)
family 2 glycosyl transferase bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
family 2 glycosyl transferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_411_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(5138..5764)
DNA (627bp) protein (209aa)
Lon protease Tax=Dialister succinatiphilus YIT 11850 RepID=H1D184_9FIRM
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_7
Acaryochloris marina, Acaryochloris, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(5766..6896)
DNA (1131bp) protein (377aa)
Polysaccharide deacetylase Tax=Acaryochloris marina (strain MBIC 11017) RepID=B0C831_ACAM1
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ABW27715.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Acaryochloris.;" source="Acaryochloris marina (strain MBIC 11017).;"
PLM4_65_b1_redo_sep16_scaffold_411_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6899..8023)
DNA (1125bp) protein (375aa)
Group 1 glycosyl transferase Tax=Leptolyngbya sp. Heron Island J RepID=U9W6X0_9CYAN
glycogen synthase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(8029..8997)
DNA (969bp) protein (323aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
membrane protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

9011..9820
DNA (810bp) protein (270aa)
hypothetical protein bin=CNBR_ACIDO species=Citreicella sp. 357 genus=Citreicella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

9868..11493
DNA (1626bp) protein (542aa)
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGL4_CHLTF
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

11683..12129
DNA (447bp) protein (149aa)
Putative isobutyryl-CoA mutase Tax=Kitasatospora setae (strain ATCC 33774 / DSM 43861 / JCM 3304 / KCC A-0304 / NBRC 14216 / KM-6054) RepID=E4NCG3_KITSK
icmB; putative isobutyryl-CoA mutase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_13
R_NC10_66_22, NC10, Bacteria

Not on your lists

12249..13814
DNA (1566bp) protein (522aa)
Response regulator containing a CheY-like receiver domain and a GGDEF domain protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE79_CHLTF
response regulator containing a CheY-like receiver domain and a GGDEF domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_411_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


13838..16483
DNA (2646bp) protein (882aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9)
ValS protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9FRI6_SORC5
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

16483..17274
DNA (792bp) protein (264aa)
biotin--acetyl-CoA-carboxylase ligase (EC:6.3.4.15)
BirA, biotin-(Acetyl-CoA-carboxylase) ligase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6P442_9FIRM
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_16
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

17280..18056
DNA (777bp) protein (259aa)
coaX; type III pantothenate kinase (Pantothenic acid kinase) (PanK-III) (EC:2.7.1.33)
Type III pantothenate kinase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKT7_9BACT
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_17
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

18063..18734
DNA (672bp) protein (224aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00037188B7
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_65_b1_redo_sep16_scaffold_411_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

18731..20032
DNA (1302bp) protein (434aa)
23S rRNA (uracil-5-)-methyltransferase RumA (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01U84_SOLUE
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

20228..22567
DNA (2340bp) protein (780aa)
Metallo-beta-lactamase superfamily bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Metallo-beta-lactamase superfamily
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

22673..23062
DNA (390bp) protein (130aa)
Putative uncharacterized protein Tax=uncultured Desulfobacterium sp. RepID=E1YM38_9DELT
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

23059..25002
DNA (1944bp) protein (648aa)
Tetratricopeptide domain protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JEU8_ANAD2
Tetratricopeptide domain-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

25005..26225
DNA (1221bp) protein (407aa)
Putative uncharacterized protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2ILF8_ANADE
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_23
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

26245..27183
DNA (939bp) protein (313aa)
Riboflavin biosynthesis protein RibF Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LJC7_HALO1
riboflavin biosynthesis protein RibF
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_24
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

27204..27578
DNA (375bp) protein (125aa)
Anti-sigma factor antagonist Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJQ4_RHOMR
anti-sigma-factor antagonist
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
PLM4_65_b1_redo_sep16_scaffold_411_25
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

27575..28033
DNA (459bp) protein (153aa)
Putative anti-sigma regulatory factor, serine/threonine protein kinase Tax=Caldithrix abyssi DSM 13497 RepID=H1XTM9_9BACT
anti-sigma regulatory factor
Putative anti-sigma regulatory factor, serine/threonine protein kinase {ECO:0000313|EMBL:EHO41504.1}; species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
PLM4_65_b1_redo_sep16_scaffold_411_26
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

28030..29784
DNA (1755bp) protein (585aa)
Protein serine phosphatase with GAF(S) sensor(S) Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MDK1_RHOM4
protein serine phosphatase with GAF(s) sensor(s)
Protein serine phosphatase with GAF(S) sensor(S) {ECO:0000313|EMBL:ACY47194.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10); (Rhodothermus obamensis).;"
PLM4_65_b1_redo_sep16_scaffold_411_27
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

29781..31190
DNA (1410bp) protein (470aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGU4_CHLTF
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_28
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

31316..31561
DNA (246bp) protein (82aa)
UPF0102 protein STH1475 Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Y1475_SYMTH
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_411_trna_2
unknown

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comp(31589..31668)
DNA (80bp)
transferRNA Gly
PLM4_65_b1_redo_sep16_scaffold_411_trna_1
unknown

Not on your lists

31823..31903
DNA (81bp)
transferRNA Cys
Displaying items 1-30 of 40 in total

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