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PLM4_65_b1_redo_sep16_scaffold_712

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_712_1
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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1..1653
DNA (1653bp) protein (551aa)
His Kinase A (Phospho-acceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./GAF domain Tax=Chthonomonas calidirosea T49 RepID=S0ET43_9BACT
His Kinase A (phospho-acceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./GAF domain
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_712_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(1770..3023)
DNA (1254bp) protein (418aa)
Threonine synthase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A850_GEMAT
threonine synthase
Threonine synthase {ECO:0000313|EMBL:AHG89128.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_712_3
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(3020..3937)
DNA (918bp) protein (306aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00080104}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
Homoserine kinase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SF12_RHOMR
homoserine kinase
PLM4_65_b1_redo_sep16_scaffold_712_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

3998..6460
DNA (2463bp) protein (821aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI00035C09E7
YjgP/YjgQ family permease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_712_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(6462..8195)
DNA (1734bp) protein (578aa)
PHP domain-containing protein bin=CNBR_ACIDO species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_712_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(8207..9358)
DNA (1152bp) protein (384aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase bin=GWF2_Nitrospirae_44_13 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Nitrospirae_44_13 organism_group=Nitrospirae
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_712_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(9472..10410)
DNA (939bp) protein (313aa)
Tyrosine recombinase XerD Tax=Methyloglobulus morosus KoM1 RepID=V5E0I0_9GAMM
xerD; tyrosine recombinase xerd
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_712_8
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10412..12004)
DNA (1593bp) protein (531aa)
Integral membrane protein MviN Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LJD3_HALO1
integral membrane protein MviN
Putative lipid II flippase MurJ {ECO:0000256|PIRNR:PIRNR002869}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
PLM4_65_b1_redo_sep16_scaffold_712_9
uncultured Acidobacteria bacterium, Acidobacteria, Bacteria

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12058..12330
DNA (273bp) protein (91aa)
30S ribosomal protein S20 Tax=uncultured Acidobacteria bacterium RepID=H5SFW3_9BACT
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; species="Bacteria; Acidobacteria; environmental samples.;" source="uncultured Acidobacteria bacterium.;"
rpsT; 30S ribosomal protein S20
PLM4_65_b1_redo_sep16_scaffold_712_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(12305..13360)
DNA (1056bp) protein (352aa)
holA; putative DNA polymerase III subunit delta (EC:2.7.7.7)
DNA polymerase III subunit delta Tax=Exiguobacterium pavilionensis RW-2 RepID=U1N3A9_9BACL
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_712_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(13368..13892)
DNA (525bp) protein (175aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_712_12
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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comp(13889..16366)
DNA (2478bp) protein (826aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
leucyl-tRNA synthetase (EC:6.1.1.4 6.1.1.9)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_712_13
unknown

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16533..17045
DNA (513bp) protein (171aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_712_14
RBG_16_Deltaproteobacteria_71_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(17081..19153)
DNA (2073bp) protein (691aa)
Fe-S oxidoreductase bin=GWA2_Ignavibacteria_55_11 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
protein of unknown function DUF224 cysteine-rich region domain protein
Tax=RBG_16_Deltaproteobacteria_71_12_curated
PLM4_65_b1_redo_sep16_scaffold_712_15
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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comp(19182..20162)
DNA (981bp) protein (327aa)
Electron transfer flavoprotein, alpha subunit Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LD69_CHLTF
electron transfer flavoprotein subunit alpha
Electron transfer flavoprotein, alpha subunit {ECO:0000313|EMBL:AEP11929.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_712_16
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

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comp(20164..20946)
DNA (783bp) protein (261aa)
electron transfer flavoprotein subunit alpha/beta; K03521 electron transfer flavoprotein beta subunit bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
electron transfer flavoprotein subunit beta
Tax=RBG_16_Aminicenantes_66_30_curated
PLM4_65_b1_redo_sep16_scaffold_712_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(20960..22207)
DNA (1248bp) protein (416aa)
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029W5_SOLUE
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_712_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(22232..22474)
DNA (243bp) protein (81aa)
acpP; acyl carrier protein; K02078 acyl carrier protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
acyl carrier protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_712_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(22533..23276)
DNA (744bp) protein (248aa)
3-oxoacyl-(Acyl-carrier-protein) reductase Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G2S5_CHLAD
3-oxoacyl-(acyl-carrier-protein) reductase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_712_20
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(23276..24220)
DNA (945bp) protein (315aa)
Malonyl CoA-acyl carrier protein transacylase bin=GWC2_Methylomirabilis_70_16 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ACP S-malonyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_712_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(24217..25203)
DNA (987bp) protein (329aa)
plsX; acyl-(acyl carrier protein)--phosphate acyltransferase; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] bin=bin7_NC10_sister species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
fatty acid/phospholipid synthesis protein PlsX
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_712_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


comp(25313..25495)
DNA (183bp) protein (61aa)
50S ribosomal protein L32 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI000380FA7D
rpmF; 50S ribosomal protein L32
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_712_23
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(25504..26049)
DNA (546bp) protein (182aa)
hypothetical protein; K07040 uncharacterized protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_712_24
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(26096..27040)
DNA (945bp) protein (315aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003646A50
tRNA delta(2)-isopentenylpyrophosphate transferase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_712_25
unknown

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comp(27016..27111)
DNA (96bp) protein (32aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_712_26
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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comp(27108..28226)
DNA (1119bp) protein (373aa)
Putative uncharacterized protein Tax=uncultured bacterium 293 RepID=E3T607_9BACT
hypothetical protein
Tax=RBG_13_OP8X_37_8_curated
PLM4_65_b1_redo_sep16_scaffold_712_27
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(28320..29516)
DNA (1197bp) protein (399aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA252-O11 RepID=UPI000369686D
SpoIID/LytB domain protein
SpoIID/LytB domain protein {ECO:0000313|EMBL:CCC73469.1}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
PLM4_65_b1_redo_sep16_scaffold_712_28
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(29603..30553)
DNA (951bp) protein (317aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI80920.1}; species="Bacteria; Deferribacteres; Deferribacterales; Deferribacteraceae; Deferribacter.;" source="Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC; 101012 / SSM1).;"
PLM4_65_b1_redo_sep16_scaffold_712_29
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(30690..31622)
DNA (933bp) protein (311aa)
Oxidoreductase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV63_KORVE
oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM4_65_b1_redo_sep16_scaffold_712_30
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(31615..32367)
DNA (753bp) protein (251aa)
Uncharacterized protein {ECO:0000313|EMBL:CDM66339.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein; K09949 hypothetical protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Displaying items 1-30 of 33 in total

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