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PLM4_65_b1_redo_sep16_scaffold_5617

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5617_1
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

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3..2309
DNA (2307bp) protein (769aa)
Putative uncharacterized protein bin=GWF2_Lentisphaerae_57_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PLM4_65_b1_redo_sep16_scaffold_5617_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(2322..3335)
DNA (1014bp) protein (338aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) Tax=mine drainage metagenome RepID=E6QHH0_9ZZZZ
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_5617_3
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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3380..4924
DNA (1545bp) protein (515aa)
Putative permease Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A971_GEMAT
Amino acid permease {ECO:0000313|EMBL:KFA88292.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
putative permease
PLM4_65_b1_redo_sep16_scaffold_5617_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(4970..6061)
DNA (1092bp) protein (364aa)
Uncharacterized protein Tax=Eimeria praecox RepID=U6GZY5_9EIME
ribonuclease E
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_5617_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(6061..6636)
DNA (576bp) protein (192aa)
RNA polymerase sigma factor Tax=Nitrolancetus hollandicus Lb RepID=I4EJ01_9CHLR
RNA polymerase sigma-H factor
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_5617_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(6947..7576)
DNA (630bp) protein (210aa)
OmpA/MotB domain-containing protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
OmpA/MotB domain-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_5617_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(7638..8546)
DNA (909bp) protein (303aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA252-K06 RepID=UPI0003B34937
von Willebrand factor type A domain-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_5617_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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comp(8658..10424)
DNA (1767bp) protein (589aa)
serine phosphatase bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
serine phosphatase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_5617_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

10470..10934
DNA (465bp) protein (155aa)
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-) bin=CNBR_ACIDO species=Brevibacillus borstelensis genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
3-hydroxyacyl-ACP dehydratase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_5617_10
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10883..11713
DNA (831bp) protein (277aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
UPI0003CE9622 related cluster Tax=unknown RepID=UPI0003CE9622
pseudouridine synthase
PLM4_65_b1_redo_sep16_scaffold_5617_11
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

11844..13232
DNA (1389bp) protein (463aa)
Serine/threonine protein kinase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01P82_SOLUE
serine/threonine protein kinase
Tax=RBG_13_Acidobacteria_68_16_curated
Displaying 11 items

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