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PLM4_65_b1_redo_sep16_scaffold_1128

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1128_1
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(3..1313)
DNA (1311bp) protein (437aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LRC5_HALO1
PLM4_65_b1_redo_sep16_scaffold_1128_trna_1
unknown

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1404..1475
DNA (72bp)
transferRNA Glu
PLM4_65_b1_redo_sep16_scaffold_1128_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(1697..4474)
DNA (2778bp) protein (926aa)
serine/threonine protein kinase bin=RBG_19FT_COMBO_Aminicenantes_65_30 tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1128_3
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(4651..6639)
DNA (1989bp) protein (663aa)
Amino acid permease-associated region Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFP8_9BACT
amino acid permease-associated region
Amino acid permease-associated region {ECO:0000313|EMBL:CBE68579.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_1128_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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6713..8824
DNA (2112bp) protein (704aa)
GTPase-like protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JGF7_ANAD2
GTPase-like protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1128_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(8834..9985)
DNA (1152bp) protein (384aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1128_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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10154..10753
DNA (600bp) protein (200aa)
Transcriptional regulator, TetR family Tax=Geobacter daltonii (strain DSM 22248 / JCM 15807 / FRC-32) RepID=B9M2D3_GEODF
TetR family transcriptional regulator
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1128_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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10750..12114
DNA (1365bp) protein (455aa)
Efflux pump, RND family, inner and outer membrane proteins Tax=Geobacter sulfurreducens RepID=D7ALH7_GEOSK
RND family efflux pump inner and outer membrane proteins
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1128_8
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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12111..13244
DNA (1134bp) protein (378aa)
RND family efflux transporter MFP subunit Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8N170_CORCM
efflux transporter, RND family, MFP subunit
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_1128_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

13262..16414
DNA (3153bp) protein (1051aa)
Acriflavin resistance protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LGA9_SYNFM
acriflavin resistance protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1128_10
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16552..17706)
DNA (1155bp) protein (385aa)
geranylgeranyl reductase (EC:1.-.-.-) bin=CNBR_ACIDO species=Thioalkalivibrio thiocyanodenitrificans genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
geranylgeranyl reductase (EC:1.-.-.-)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
PLM4_65_b1_redo_sep16_scaffold_1128_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(17685..18944)
DNA (1260bp) protein (420aa)
hypothetical protein Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037FFD95
cyclopropane-fatty-acyl-phospholipid synthase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1128_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists


19108..19893
DNA (786bp) protein (262aa)
RecA/RadA recombinase-like bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
recombinase A
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1128_13
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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19902..21197
DNA (1296bp) protein (432aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QX1_SOLUE
DNA repair nucleotidyltransferase/DNA polymerase-like protein
Nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein {ECO:0000313|EMBL:ABJ87949.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_1128_14
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21194..21625)
DNA (432bp) protein (144aa)
Signal transduction protein with CBS domain protein Tax=mine drainage metagenome RepID=T1CJF3_9ZZZZ
Histidine kinase {ECO:0000313|EMBL:AKC87385.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
signal transduction protein with CBS domains
PLM4_65_b1_redo_sep16_scaffold_1128_15
Leptospira licerasiae, Leptospira, Spirochaetia, Spirochaetes, Bacteria

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comp(21772..23271)
DNA (1500bp) protein (500aa)
hypothetical protein Tax=Zavarzinella formosa RepID=UPI0002DB4A3B
Putative deoxyribodipyrimidine photo-lyase {ECO:0000313|EMBL:EIE00036.1}; species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira licerasiae serovar Varillal str. VAR 010.;"
phr; deoxyribodipyrimidine photolyase
PLM4_65_b1_redo_sep16_scaffold_1128_16
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

23361..23831
DNA (471bp) protein (157aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1128_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

23828..26722
DNA (2895bp) protein (965aa)
D-lactate dehydrogenase (Cytochrome) Tax=Holophaga foetida DSM 6591 RepID=H1P527_9BACT
FAD linked oxidase domain-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1128_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

26715..27326
DNA (612bp) protein (204aa)
Hypothetical membrane protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A8W2_GEMAT
SNARE associated protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1128_19
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(27341..28105)
DNA (765bp) protein (255aa)
Enoyl-CoA hydratase/isomerase family protein Tax=Xanthomonas axonopodis RepID=H1XGS5_9XANT
Uncharacterized protein {ECO:0000313|EMBL:KDA54878.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
enoyl-CoA hydratase
PLM4_65_b1_redo_sep16_scaffold_1128_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

28198..29259
DNA (1062bp) protein (354aa)
pflA; pyruvate formate-lyase activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase activating enzyme bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 21 items

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