ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_1369

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1369_1
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(3..2117)
DNA (2115bp) protein (705aa)
DEAD/DEAH box helicase domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XLH7_9BACT
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:EEF59380.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DEAD/DEAH box helicase
PLM4_65_b1_redo_sep16_scaffold_1369_2
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

Not on your lists

2304..2951
DNA (648bp) protein (216aa)
Uncharacterized protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CBL4_THET1
hypothetical protein
Tax=RBG_16_Chloroflexi_57_9_curated
PLM4_65_b1_redo_sep16_scaffold_1369_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3105..4427)
DNA (1323bp) protein (441aa)
alkylhalidase Tax=Gemmata obscuriglobus RepID=UPI00016C544E
tryptophan halogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_1369_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(4424..5737)
DNA (1314bp) protein (438aa)
phenylacetate--CoA ligase (EC:6.2.1.30)
coenzyme F390 synthetase Tax=Schlesneria paludicola RepID=UPI00029A1D65
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_1369_5
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(5734..6204)
DNA (471bp) protein (157aa)
Thioesterase superfamily protein Tax=Chthoniobacter flavus Ellin428 RepID=B4D7N2_9BACT
thioesterase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_1369_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6197..6787)
DNA (591bp) protein (197aa)
Uncharacterized protein Tax=Pedosphaera parvula Ellin514 RepID=B9XPY1_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_1369_7
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(6845..8179)
DNA (1335bp) protein (445aa)
coproporphyrinogen dehydrogenase (EC:1.3.99.22)
Coproporphyrinogen dehydrogenase Tax=Pedosphaera parvula Ellin514 RepID=B9XPY0_9BACT
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_1369_8
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

8242..10065
DNA (1824bp) protein (608aa)
Histone deacetylase superfamily protein Tax=Plesiocystis pacifica SIR-1 RepID=A6FY71_9DELT
histone deacetylase superfamily protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1369_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

10096..11760
DNA (1665bp) protein (555aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LI21_CHLTF
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_1369_10
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

12085..13407
DNA (1323bp) protein (441aa)
O-acetylhomoserine/O-acetylserine sulfhydrylase {ECO:0000313|EMBL:ACL45203.1}; EC=2.5.1.49 {ECO:0000313|EMBL:ACL45203.1};; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7425 / ATCC 29141).;"
O-acetylhomoserine/O-acetylserine sulfhydrylase Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HKX1_CYAP4
O-acetylhomoserine/O-acetylserine sulfhydrylase
PLM4_65_b1_redo_sep16_scaffold_1369_11
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13404..14495
DNA (1092bp) protein (364aa)
homoserine dehydrogenase / homoserine O-acetyltransferase (EC:1.1.1.3 2.3.1.31)
Homoserine dehydrogenase / homoserine O-acetyltransferase Tax=Anaeromyxobacter dehalogenans (strain 2CP-C) RepID=Q2IQU2_ANADE
Homoserine O-acetyltransferase {ECO:0000313|EMBL:GAO02478.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
PLM4_65_b1_redo_sep16_scaffold_1369_12
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

14483..15433
DNA (951bp) protein (317aa)
aspartate kinase (EC:1.1.1.3 2.7.2.4)
Aspartate kinase {ECO:0000313|EMBL:AEN72590.1}; EC=1.1.1.3 {ECO:0000313|EMBL:AEN72590.1};; EC=2.7.2.4 {ECO:0000313|EMBL:AEN72590.1};; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
Aspartate kinase Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SFY1_RHOMR
PLM4_65_b1_redo_sep16_scaffold_1369_13
Phycisphaera mikurensis, Phycisphaera, Phycisphaerales, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

15483..17753
DNA (2271bp) protein (757aa)
Uncharacterized protein Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0ICU1_PHYMF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM03079.1}; species="Bacteria; Planctomycetes; Phycisphaerae; Phycisphaerales; Phycisphaeraceae; Phycisphaera.;" source="Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 /; FYK2301M01).;"
PLM4_65_b1_redo_sep16_scaffold_1369_14
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists

17759..19918
DNA (2160bp) protein (720aa)
sulfatase bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
sulfatase
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
PLM4_65_b1_redo_sep16_scaffold_1369_15

Not on your lists

19915..22098
DNA (2184bp) protein (728aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN38371.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
sulfatase
PLM4_65_b1_redo_sep16_scaffold_1369_16
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(22273..25095)
DNA (2823bp) protein (941aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
TonB-dependent receptor
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1369_17
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

25420..26514
DNA (1095bp) protein (365aa)
linoleoyl-CoA desaturase (EC:1.14.19.3)
fatty acid desaturase bin=bin7_NC10_sister species=Rhodanobacter sp. 115 genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM4_65_b1_redo_sep16_scaffold_1369_18
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26591..26971
DNA (381bp) protein (127aa)
Putative ATP-dependent DNA/RNA helicase Tax=Azospirillum brasilense Sp245 RepID=G8AF76_AZOBR
disulfide oxidoreductase
Disulfide oxidoreductase {ECO:0000313|EMBL:AIB10481.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
Displaying 18 items

View Taxonomy