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PLM4_65_b1_redo_sep16_scaffold_1560

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1560_1
unknown

Not on your lists

2..166
DNA (165bp) protein (55aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1560_2
RBG_13_Deltaproteobacteria_65_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163..1329)
DNA (1167bp) protein (389aa)
EAL domain/GGDEF domain protein Tax=Plesiocystis pacifica SIR-1 RepID=A6GF69_9DELT
diguanylate phosphodiesterase
Tax=RBG_13_Deltaproteobacteria_65_10_curated
PLM4_65_b1_redo_sep16_scaffold_1560_3
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1628..3619)
DNA (1992bp) protein (664aa)
Putative uncharacterized protein bin=GWB2_Deltaproteobacteria_65_81 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
multi-sensor hybrid histidine kinase
Tax=RBG_16_Deltaproteobacteria_50_11_curated
PLM4_65_b1_redo_sep16_scaffold_1560_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3678..6368)
DNA (2691bp) protein (897aa)
Serine/threonine protein kinase Tax=Anaeromyxobacter RepID=B4UM63_ANASK
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1560_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(6406..6663)
DNA (258bp) protein (86aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1560_6
unknown

Not on your lists

comp(7135..7371)
DNA (237bp) protein (79aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1560_7
Deinococcus maricopensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(7368..8570)
DNA (1203bp) protein (401aa)
subtilisin (EC:3.4.21.62)
Subtilisin {ECO:0000313|EMBL:ADV65806.1}; EC=3.4.21.62 {ECO:0000313|EMBL:ADV65806.1};; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946; / LB-34).;"
Subtilisin Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) RepID=E8U3D5_DEIML
PLM4_65_b1_redo_sep16_scaffold_1560_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(8567..9007)
DNA (441bp) protein (147aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1560_9
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9184..11664)
DNA (2481bp) protein (827aa)
Putative Two-component hybrid sensor and regulator Tax=Frankia alni (strain ACN14a) RepID=Q0RSM2_FRAAA
two-component hybrid sensor and regulator
Putative Two-component hybrid sensor and regulator {ECO:0000313|EMBL:CAJ59437.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
PLM4_65_b1_redo_sep16_scaffold_1560_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11866..14817)
DNA (2952bp) protein (984aa)
Pc22g03720 protein Tax=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) RepID=B6HRS8_PENCW
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1560_11
unknown

Not on your lists

14870..15052
DNA (183bp) protein (61aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1560_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

15169..16077
DNA (909bp) protein (303aa)
UspA domain protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
usp; universal stress protein Usp
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1560_13
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16118..17734)
DNA (1617bp) protein (539aa)
Beta-lactamase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UMQ1_MYXSD
Uncharacterized protein {ECO:0000313|EMBL:AKF86830.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
beta-lactamase
PLM4_65_b1_redo_sep16_scaffold_1560_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

17870..19708
DNA (1839bp) protein (613aa)
uncharacterized protein containing a von Willebrand factor type A (vWA) domain bin=CNBR_ACIDO species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
uncharacterized protein containing a von Willebrand factor type A (vWA) domain
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1560_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(19698..20909)
DNA (1212bp) protein (404aa)
2-amino-3-ketobutyrate coenzyme A ligase Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EQC7_RUNSL
2-amino-3-ketobutyrate CoA ligase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1560_16
Azotobacter vinelandii, Azotobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20982..22364
DNA (1383bp) protein (461aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Azotobacter.;" source="Azotobacter vinelandii CA6.;"
Adenylosuccinate lyase Tax=Azotobacter vinelandii RepID=C1DFC3_AZOVD
adenylosuccinate lyase
PLM4_65_b1_redo_sep16_scaffold_1560_17
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(22361..25279)
DNA (2919bp) protein (973aa)
Putative Oar protein Tax=uncultured Acidobacteria bacterium RepID=Q7X324_9BACT
Outer membrane receptor protein {ECO:0000313|EMBL:CDM66800.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
CnaB domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_1560_18
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(25366..26937)
DNA (1572bp) protein (524aa)
Sulfate permease, putative Tax=Reinekea blandensis MED297 RepID=A4BH11_9GAMM
sulfate transporter
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_1560_19

Not on your lists

comp(26934..28925)
DNA (1992bp) protein (664aa)
Cl-channel voltage-gated family protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XRD7_9BACT
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49209.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
chloride channel protein
PLM4_65_b1_redo_sep16_scaffold_1560_20
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(28922..31828)
DNA (2907bp) protein (969aa)
Molydopterin dinucleotide-binding region Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7LZ00_ACIFD
molydopterin dinucleotide-binding subunit
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM4_65_b1_redo_sep16_scaffold_1560_21
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(31840..33384)
DNA (1545bp) protein (515aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein Tax=Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) RepID=C7LZ01_ACIFD
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM4_65_b1_redo_sep16_scaffold_1560_22
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(33431..33673)
DNA (243bp) protein (81aa)
SirA family protein Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G7A4_CHLAD
SirA family protein
SirA family protein {ECO:0000313|EMBL:ACL24061.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
PLM4_65_b1_redo_sep16_scaffold_1560_23
Aneurinibacillus aneurinilyticus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(33715..34908)
DNA (1194bp) protein (398aa)
hypothetical protein Tax=Laceyella sacchari RepID=UPI0003B612D6
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:ERI09747.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneurinibacillus.;" source="Aneurinibacillus aneurinilyticus ATCC 12856.;"
gloB; beta-lactamase
PLM4_65_b1_redo_sep16_scaffold_1560_24
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

comp(34917..35516)
DNA (600bp) protein (200aa)
Coenzyme A disulfide reductase Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I751_CALAS
cdr; coenzyme A disulfide reductase
Coenzyme A disulfide reductase {ECO:0000313|EMBL:BAM01089.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM4_65_b1_redo_sep16_scaffold_1560_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(35749..37062)
DNA (1314bp) protein (438aa)
6-Phosphofructokinase bin=GWC2_Methylomirabilis_70_16 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pfk; 6-Phosphofructokinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1560_26
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

37185..38081
DNA (897bp) protein (299aa)
hypothetical protein Tax=Hymenobacter aerophilus RepID=UPI0003682826
Contig82, whole genome shotgun sequence {ECO:0000313|EMBL:KIO75787.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1560_27
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38246..38782)
DNA (537bp) protein (179aa)
Regulatory protein, FmdB family Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C2V3_NITHN
FmdB family transcriptional regulator
Regulatory protein, FmdB family {ECO:0000313|EMBL:ADE16778.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM4_65_b1_redo_sep16_scaffold_1560_28
R_NC10_66_22, NC10, Bacteria

Not on your lists

38837..39421
DNA (585bp) protein (195aa)
ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (EC:4.1.1.-)
3-polyprenyl-4-hydroxybenzoate decarboxylase bin=GWA2_Methylomirabilis_73_35 species=Citrobacter freundii genus=Citrobacter taxon_order=Enterobacteriales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_1560_29
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(39429..40331)
DNA (903bp) protein (301aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1560_30
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40342..40956)
DNA (615bp) protein (205aa)
ThiJ/PfpI domain protein bin=GWF2_Methylomirabilis_70_14 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ThiJ/PfpI domain-containing protein
Tax=RBG_16_Deltaproteobacteria_47_11_curated
Displaying items 1-30 of 32 in total

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