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PLM4_65_b1_redo_sep16_scaffold_1759

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1759_1
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79..2373)
DNA (2295bp) protein (765aa)
Uncharacterized protein Tax=Cystobacter fuscus DSM 2262 RepID=S9Q7K0_9DELT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
PLM4_65_b1_redo_sep16_scaffold_1759_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(2370..3731)
DNA (1362bp) protein (454aa)
accC; acetyl-CoA carboxylase, biotin carboxylase (EC:6.4.1.2); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
accC; acetyl-Coa carboxylase, biotin carboxylase (EC:6.4.1.2 6.3.4.14)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_1759_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3757..4212)
DNA (456bp) protein (152aa)
acetyl-CoA carboxylase, biotin carboxyl carrier protein (EC:6.4.1.1)
Acetyl-CoA carboxylase biotin carboxyl carrier subunit Tax=Neisseria wadsworthii 9715 RepID=G4CSY7_9NEIS
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_1759_4
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(4262..4630)
DNA (369bp) protein (123aa)
Putative distant relative of homeotic protein bithoraxoid Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIR2_CHLTF
hypothetical protein
Putative distant relative of homeotic protein bithoraxoid {ECO:0000313|EMBL:AEP12280.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_1759_5
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(4627..5769)
DNA (1143bp) protein (381aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA52987.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1759_6
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(5840..6391)
DNA (552bp) protein (184aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_1759_7
RBG_19FT_COMBO_Aminicenantes_59_29_curated, Aminicenantes, Bacteria

Not on your lists

comp(6402..7010)
DNA (609bp) protein (203aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Tax=RBG_19FT_COMBO_Aminicenantes_59_29_curated
PLM4_65_b1_redo_sep16_scaffold_1759_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(7025..7513)
DNA (489bp) protein (163aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
type IV pilus secretin PilQ
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM4_65_b1_redo_sep16_scaffold_1759_9
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(7504..9432)
DNA (1929bp) protein (643aa)
type II and III secretion system protein; K02666 type IV pilus assembly protein PilQ bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
type II and III secretion system protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_1759_10
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(9432..10007)
DNA (576bp) protein (192aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_1759_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(10004..10627)
DNA (624bp) protein (208aa)
hypothetical protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Pilus assembly protein PilO
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_1759_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(10643..11299)
DNA (657bp) protein (219aa)
Type IV pilus assembly protein PilN Tax=uncultured prokaryote RepID=H5SKW6_9ZZZZ
pilN; type IV pilus biogenesis protein PilN
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1759_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(11296..12363)
DNA (1068bp) protein (356aa)
Type IV pilus assembly protein PilM Tax=uncultured prokaryote RepID=H5SKW7_9ZZZZ
type IV pilus assembly protein PilM
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1759_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12945..13913)
DNA (969bp) protein (323aa)
glpX; fructose 1,6-bisphosphatase II (EC:3.1.3.11); K02446 fructose-1,6-bisphosphatase II [EC:3.1.3.11] bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
glpX; fructose 1,6-bisphosphatase II
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1759_15
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(14064..15266)
DNA (1203bp) protein (401aa)
acyl-CoA dehydrogenase domain-containing protein bin=RBG_19FT_COMBO_GAL15_69_19 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_1759_16
unknown

Not on your lists

comp(15263..15547)
DNA (285bp) protein (95aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1759_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(15544..16371)
DNA (828bp) protein (276aa)
Cyclohexa-1,5-diene-1-carbonyl-CoA hydratase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IS86_KORVE
enoyl-CoA hydratase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1759_18
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

16520..17986
DNA (1467bp) protein (489aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Nicotinate phosphoribosyltransferase Tax=Pedosphaera parvula Ellin514 RepID=B9XDY3_9BACT
nicotinate phosphoribosyltransferase
PLM4_65_b1_redo_sep16_scaffold_1759_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

18100..19251
DNA (1152bp) protein (384aa)
Nitrogen fixation iron-sulfur cluster assembly cysteine desulfurase NifS Tax=Geobacter sulfurreducens RepID=D7AKV2_GEOSK
nifS-2; nitrogen fixation iron-sulfur cluster assembly cysteine desulfurase NifS
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1759_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(19604..20479)
DNA (876bp) protein (292aa)
Lipoyl synthase bin=GWA2_Ignavibacteria_55_11 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
lipoyl synthase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1759_21
Danio rerio, Danio, Cypriniformes, Neopterygii, Chordata, Metazoa

Not on your lists

comp(20476..20829)
DNA (354bp) protein (118aa)
Calsequestrin Tax=Danio rerio RepID=F1QXT6_DANRE
Calsequestrin {ECO:0000256|RuleBase:RU000648}; species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio.;" source="Danio rerio (Zebrafish) (Brachydanio rerio).;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1759_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

21007..21609
DNA (603bp) protein (201aa)
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI00035C2763
FHA domain-containing protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1759_23
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

21764..22897
DNA (1134bp) protein (378aa)
4Fe-4S ferredoxin bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
4Fe-4S ferredoxin, iron-sulfur binding protein
Tax=CSP1_3_Armatimonadetes
PLM4_65_b1_redo_sep16_scaffold_1759_24
Candidatus Brocadia sinica, Candidatus Brocadia, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

22894..23358
DNA (465bp) protein (155aa)
Putative transcriptional regulator Crp/Fnr family {ECO:0000313|EMBL:GAN35232.1}; species="Bacteria; Planctomycetes; Planctomycetia; Candidatus Brocadiales; Candidatus Brocadiaceae; Candidatus Brocadia.;" source="Candidatus Brocadia sinica JPN1.;"
Crp/Fnr family transcriptional regulator bin=bin9_gal15 species=Mycobacterium kansasii genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
putative Crp/Fnr family transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_1759_25
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

23345..24211
DNA (867bp) protein (289aa)
Oxidoreductase FAD/NAD(P)-binding domain protein Tax=uncultured candidate division OP1 bacterium RepID=H5SS40_9BACT
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:BAL58976.1}; species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
putative oxidoreductase FAD/NAD(P)-binding domain protein
PLM4_65_b1_redo_sep16_scaffold_1759_26
uncultured Acetothermia bacterium, Acetothermia, Bacteria

Not on your lists

24213..24998
DNA (786bp) protein (262aa)
NADH ubiquinone oxidoreductase 20 kDa subunit Tax=uncultured candidate division OP1 bacterium RepID=H5SN18_9BACT
NADH ubiquinone oxidoreductase 20 kDa subunit {ECO:0000313|EMBL:BAL57554.1}; species="Bacteria; Acetothermia; environmental samples.;" source="uncultured Acetothermia bacterium.;"
NADH ubiquinone oxidoreductase 20 kDa subunit
PLM4_65_b1_redo_sep16_scaffold_1759_27
Candidatus Acetothermus autotrophicum, Candidatus Acetothermum, Acetothermia, Bacteria

Not on your lists

24979..26298
DNA (1320bp) protein (440aa)
Nickel-dependent hydrogenase large subunit Tax=uncultured candidate division OP1 bacterium RepID=H5SS38_9BACT
Nickel-dependent hydrogenase large subunit {ECO:0000313|EMBL:BAL58974.1}; species="Bacteria; Acetothermia; Candidatus Acetothermum.;" source="Candidatus Acetothermus autotrophicum.;"
nickel-dependent hydrogenase large subunit
PLM4_65_b1_redo_sep16_scaffold_1759_28
CSP1_3_Armatimonadetes, Armatimonadetes, Bacteria

Not on your lists

26295..26798
DNA (504bp) protein (168aa)
hydrogenase maturation protease bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin9_gal15 organism_group=GAL15
hydrogenase maturation protease
Tax=CSP1_3_Armatimonadetes
PLM4_65_b1_redo_sep16_scaffold_1759_29
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

27062..27727
DNA (666bp) protein (222aa)
Glycine cleavage H-protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITM8_KORVE
glycine cleavage H-protein
Glycine cleavage H-protein {ECO:0000313|EMBL:ABF39772.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM4_65_b1_redo_sep16_scaffold_1759_30
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

27753..28517
DNA (765bp) protein (255aa)
Fe-S-cluster-containing hydrogenase component bin=GWA2_Ignavibacteria_55_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Fe-S-cluster-containing hydrogenase component
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying items 1-30 of 32 in total

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