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PLM4_65_b1_redo_sep16_scaffold_1930

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1930_1
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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1..876
DNA (876bp) protein (292aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00038010A6
von Willebrand factor A
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1930_2
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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888..1358
DNA (471bp) protein (157aa)
Response regulator receiver Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BXF0_NITHN
response regulator receiver
Response regulator receiver {ECO:0000313|EMBL:ADE13908.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM4_65_b1_redo_sep16_scaffold_1930_3
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(1241..3697)
DNA (2457bp) protein (819aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1930_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(3694..5565)
DNA (1872bp) protein (624aa)
Glycoside hydrolase, family 3-like Tax=mine drainage metagenome RepID=E6QLE0_9ZZZZ
glycoside hydrolase family 3 domain protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1930_5
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

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comp(5603..6271)
DNA (669bp) protein (223aa)
hypothetical protein Tax=Dasania marina RepID=UPI00036EA369
diguanylate cyclase
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PLM4_65_b1_redo_sep16_scaffold_1930_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(6271..7209)
DNA (939bp) protein (313aa)
hypothetical protein Tax=Oscillatoria sp. PCC 10802 RepID=UPI0003457051
NagC/XylR family transcriptional regulator
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1930_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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7319..7654
DNA (336bp) protein (112aa)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1930_8
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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7665..9050
DNA (1386bp) protein (462aa)
Sodium:dicarboxylate symporter Tax=Sphingobacterium sp. (strain 21) RepID=F4C5N0_SPHS2
Proton glutamate symport protein {ECO:0000313|EMBL:KHJ37413.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
sodium:dicarboxylate symporter
PLM4_65_b1_redo_sep16_scaffold_1930_9
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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comp(9039..10529)
DNA (1491bp) protein (497aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI000362FE95
major facilitator superfamily MFS_1
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1930_10
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(10529..11335)
DNA (807bp) protein (269aa)
hypothetical protein Tax=Spirosoma luteum RepID=UPI00036D5544
xylose isomerase
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:ADB40847.1}; Flags: Precursor;; species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
PLM4_65_b1_redo_sep16_scaffold_1930_11
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

11430..13055
DNA (1626bp) protein (542aa)
Putative uncharacterized protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQ25_KORVE
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1930_12
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13124..13978)
DNA (855bp) protein (285aa)
Putative methyltransferase Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VW73_9ACTO
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:AGZ39985.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM4_65_b1_redo_sep16_scaffold_1930_13
RBG_16_Anaeromyxobacter_69_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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14088..14747
DNA (660bp) protein (220aa)
Putative TetR family transcriptional regulator Tax=Rhodococcus opacus (strain B4) RepID=C1ASG7_RHOOB
TetR family transcriptional regulator
Tax=RBG_16_Anaeromyxobacter_69_14_curated
PLM4_65_b1_redo_sep16_scaffold_1930_14
Treponema primitia, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

15040..15870
DNA (831bp) protein (277aa)
Putative uncharacterized protein Tax=Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2) RepID=F5YQ58_TREPZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEF84778.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2).;"
PLM4_65_b1_redo_sep16_scaffold_1930_15
RBG_19FT_COMBO_Armatimonadetes_69_19_curated, Armatimonadetes, Bacteria

Not on your lists

comp(15924..16895)
DNA (972bp) protein (324aa)
inosine/uridine-preferring nucleoside hydrolase (EC:3.2.2.1); K01239 purine nucleosidase [EC:3.2.2.1] bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
inosine/uridine-preferring nucleoside hydrolase
Tax=RBG_19FT_COMBO_Armatimonadetes_69_19_curated
PLM4_65_b1_redo_sep16_scaffold_1930_16
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(16900..18063)
DNA (1164bp) protein (388aa)
fadA; 3-ketoacyl-CoA thiolase (EC:2.3.1.16)
3-ketoacyl-CoA thiolase bin=GWB1_Deltaproteobacteria_rel_55_8 species=unknown genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
Tax=GWB1_Bdellovibrionales_55_8_curated
PLM4_65_b1_redo_sep16_scaffold_1930_17
GWB1_Bdellovibrionales_55_8_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(18068..20224)
DNA (2157bp) protein (719aa)
multifunctional fatty acid oxidation complex subunit alpha bin=GWB1_Deltaproteobacteria_rel_55_8 species=Pseudomonas sp. HPB0071 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
fadB; multifunctional fatty acid oxidation complex subunit alpha
Tax=GWB1_Bdellovibrionales_55_8_curated
PLM4_65_b1_redo_sep16_scaffold_1930_trna_4
unknown

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comp(20446..20517)
DNA (72bp)
transferRNA Pseudo
PLM4_65_b1_redo_sep16_scaffold_1930_trna_3
unknown

Not on your lists

comp(20530..20600)
DNA (71bp)
transferRNA Val
PLM4_65_b1_redo_sep16_scaffold_1930_trna_2
unknown

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comp(20716..20787)
DNA (72bp)
transferRNA Gly
PLM4_65_b1_redo_sep16_scaffold_1930_18

Not on your lists

21653..22099
DNA (447bp) protein (149aa)
Uncharacterized protein Tax=Hydrogenobacter thermophilus (strain DSM 6534 / IAM 12695 / TK-6) RepID=D3DIG4_HYDTT
Uncharacterized protein {ECO:0000313|EMBL:KKN27681.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1930_trna_1
unknown

Not on your lists

22228..22293
DNA (66bp)
transferRNA Pseudo
PLM4_65_b1_redo_sep16_scaffold_1930_19
unknown

Not on your lists

22630..22752
DNA (123bp) protein (41aa)

This feature has no annotations

Displaying 23 items

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