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PLM4_65_b1_redo_sep16_scaffold_1981

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1981_1

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comp(2..2296)
DNA (2295bp) protein (765aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; species="Bacteria; environmental samples.;" source="uncultured bacterium 293.;"
Transcription-repair-coupling factor Tax=uncultured bacterium 293 RepID=E3T603_9BACT
transcription-repair coupling factor
PLM4_65_b1_redo_sep16_scaffold_1981_2

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comp(2293..2778)
DNA (486bp) protein (162aa)
Putative uncharacterized protein Tax=uncultured bacterium 293 RepID=E3T602_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ADC35746.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium 293.;"
rfaE bifunctional protein
PLM4_65_b1_redo_sep16_scaffold_1981_3

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comp(2922..4256)
DNA (1335bp) protein (445aa)
O-antigen export system Tax=uncultured bacterium 293 RepID=E3T601_9BACT
O-antigen export system {ECO:0000313|EMBL:ADC35745.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium 293.;"
ABC transporter
PLM4_65_b1_redo_sep16_scaffold_1981_4
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(4259..5047)
DNA (789bp) protein (263aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
rfbA; o-antigen ABC exporter, permease
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_5
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(5076..5498)
DNA (423bp) protein (141aa)
ATP synthase F1 subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
atpC; ATP synthase F1 subunit epsilon (EC:3.6.3.14)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(5503..6930)
DNA (1428bp) protein (476aa)
ATP synthase F0F1 subunit beta (EC:3.6.3.14)
ATP synthase subunit beta Tax=Solibacter usitatus (strain Ellin6076) RepID=ATPB_SOLUE
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_7
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(6944..7801)
DNA (858bp) protein (286aa)
atpG; ATP synthase F1 subunit gamma; K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] bin=bin5_DeltaP species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
atpG; ATP synthase subunit gamma, membrane-bound, F1 sector (EC:3.6.3.14)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_8
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(7812..9332)
DNA (1521bp) protein (507aa)
ATP synthase F0F1 subunit alpha (EC:3.6.3.15); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ATP synthase F0F1 subunit alpha (EC:3.6.3.15)
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_9
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(9358..9945)
DNA (588bp) protein (196aa)
ATP synthase subunit delta Tax=Phenylobacterium zucineum (strain HLK1) RepID=ATPD_PHEZH
atpH; ATP synthase F1, delta subunit atpH
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(10074..10985)
DNA (912bp) protein (304aa)
selenophosphate synthase (EC:2.7.9.3)
Selenide, water dikinase Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6NYU5_9FIRM
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(11227..11652)
DNA (426bp) protein (142aa)
hypothetical protein bin=bin3_NC10 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(11672..12541)
DNA (870bp) protein (290aa)
Chromosome partitioning protein, ParB family Tax=uncultured Acidobacteria bacterium RepID=H5SEN9_9BACT
chromosome segregation DNA-binding protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_13
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(12538..13320)
DNA (783bp) protein (261aa)
SpoOJ regulator protein Tax=uncultured Acidobacteria bacterium RepID=H5SEN8_9BACT
ParA family protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(13603..14175)
DNA (573bp) protein (191aa)
Ribosomal RNA small subunit methyltransferase G Tax=Koribacter versatilis (strain Ellin345) RepID=RSMG_KORVE
methyltransferase GidB
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_15
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(14156..14869)
DNA (714bp) protein (238aa)
Single-stranded nucleic acid binding R3H Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1AR62_RUBXD
single-stranded nucleic acid binding R3H
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(14866..16548)
DNA (1683bp) protein (561aa)
YidC/Oxa1 family membrane protein insertase; K03217 preprotein translocase subunit YidC bin=CNBR_ACIDO species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein translocase subunit yidC
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1981_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(16754..17134)
DNA (381bp) protein (127aa)
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5] bin=bin3_NC10 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_18
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(17159..17293)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 Tax=Caldicellulosiruptor RepID=RL34_CALBD
50S ribosomal protein L34
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

17646..18941
DNA (1296bp) protein (432aa)
chromosomal replication initiator protein DnaA; K02313 chromosomal replication initiator protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
chromosome replication initiator DnaA
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_20
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

19168..20280
DNA (1113bp) protein (371aa)
DNA polymerase III, beta subunit; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA polymerase III subunit beta
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

20302..21366
DNA (1065bp) protein (355aa)
Recombination protein F Tax=gut metagenome RepID=J9GPL7_9ZZZZ
DNA replication and repair protein RecF
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1981_22
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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21363..22505
DNA (1143bp) protein (381aa)
DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] bin=CNBR_ACIDO species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DNA gyrase subunit B
Tax=RBG_16_Acidobacteria_70_10_curated
Displaying 22 items

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