ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_11009

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_11009_1
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..274)
DNA (273bp) protein (91aa)
Transmembrane sensor domain-like protein Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0B020_SYNWW
transmembrane sensor-like domain-containing protein
Transmembrane sensor domain-like protein {ECO:0000313|EMBL:ABI67684.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
PLM4_65_b1_redo_sep16_scaffold_11009_2
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

351..1928
DNA (1578bp) protein (526aa)
AMP-dependent synthetase and ligase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02AC7_SOLUE
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:AHG89746.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM4_65_b1_redo_sep16_scaffold_11009_3
GWC2_Bacteroidetes_46_850_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1978..2745
DNA (768bp) protein (256aa)
glycosyl hydrolase Tax=Cytophagales str. B6 RepID=UPI0003B5AD64
hypothetical protein
Tax=GWC2_Bacteroidetes_46_850_curated
PLM4_65_b1_redo_sep16_scaffold_11009_4
RLO_PLX_64_10, Bacteria

Not on your lists

2952..3692
DNA (741bp) protein (247aa)
alias=16ft_combo_ws3_scaffold_11273_17 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_65_b1_redo_sep16_scaffold_11009_5
R_Planctomycetes_50_16, Planctomycetes, Bacteria

Not on your lists

3732..4403
DNA (672bp) protein (224aa)
Putative uncharacterized protein Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GEM8_METPE bin=16ft_combo_ws3_JS1 species=Methanosphaerula palustris genus=Methanosphaerula taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Planctomycetes_50_16_curated
PLM4_65_b1_redo_sep16_scaffold_11009_6
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4426..4797
DNA (372bp) protein (124aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2EGD7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDI02839.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
cyclic nucleotide-binding protein
PLM4_65_b1_redo_sep16_scaffold_11009_7
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(4805..5377)
DNA (573bp) protein (191aa)
GTP cyclohydrolase (EC:3.5.4.16)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
GTP cyclohydrolase 1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028J6_SOLUE
PLM4_65_b1_redo_sep16_scaffold_11009_8
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists

5513..7927
DNA (2415bp) protein (805aa)
dead/deah box helicase; K06877 DEAD/DEAH box helicase domain-containing protein bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
DEAD/DEAH box helicase
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
PLM4_65_b1_redo_sep16_scaffold_11009_9
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7945..9297
DNA (1353bp) protein (451aa)
Putative uncharacterized protein Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67NY6_SYMTH
hypothetical protein
Tax=BJP_IG2102_Syntrophobacterales_60_12
Displaying 9 items

View Taxonomy