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PLM3-1_170_b1_sep16_scaffold_388

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_388_1
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(28..1365)
DNA (1338bp) protein (446aa)
Acetyl-CoA hydrolase/transferase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VE3_SOLUE
acetyl-CoA hydrolase/transferase
Acetyl-CoA hydrolase/transferase {ECO:0000313|EMBL:ABJ86372.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3-1_170_b1_sep16_scaffold_388_2
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(1392..2282)
DNA (891bp) protein (297aa)
TonB family protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029K2_SOLUE
TonB family protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_388_3
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(2499..3254)
DNA (756bp) protein (252aa)
Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains) Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LHJ0_CHLTF
soluble lytic murein transglycosylase
Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains) {ECO:0000313|EMBL:AEP12654.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM3-1_170_b1_sep16_scaffold_388_4
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(3370..4356)
DNA (987bp) protein (329aa)
galactose-1-phosphate uridylyltransferase (EC:2.7.7.12); K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] bin=bin1_lowGC species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin1_lowGC organism_group=Unknown_CP
galactose-1-phosphate uridylyltransferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM3-1_170_b1_sep16_scaffold_388_5

Not on your lists

comp(4414..5439)
DNA (1026bp) protein (342aa)
hypothetical protein Tax=Verrucomicrobium sp. 3C RepID=UPI000363C7B7
Putative ubiE/COQ5 methyltransferase family protein {ECO:0000313|EMBL:ABZ10173.1}; species="unclassified sequences; environmental samples.;" source="uncultured marine microorganism HF4000_APKG10H12.;"
smtA; SAM-dependent methyltransferase
PLM3-1_170_b1_sep16_scaffold_388_6
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(5487..5846)
DNA (360bp) protein (120aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM3-1_170_b1_sep16_scaffold_388_7

Not on your lists

comp(5909..6403)
DNA (495bp) protein (165aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000363EB41
Uncharacterized protein {ECO:0000313|EMBL:CBH99763.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_388_8
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

Not on your lists

comp(6412..7497)
DNA (1086bp) protein (362aa)
2-alkenal reductase Tax=Gloeobacter kilaueensis JS1 RepID=U5QF78_9CYAN
2-alkenal reductase
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
PLM3-1_170_b1_sep16_scaffold_388_9
unknown

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comp(7981..8499)
DNA (519bp) protein (173aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_388_10
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(8512..9447)
DNA (936bp) protein (312aa)
von Willebrand factor, type A Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01T75_SOLUE
von Willebrand factor, type A
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM3-1_170_b1_sep16_scaffold_388_11
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(9459..12593)
DNA (3135bp) protein (1045aa)
Heavy metal efflux pump, CzcA family bin=GWF2_Planctomycetes_50_10 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
silA; cation efflux system protein silA
Tax=RBG_13_Planctomycetes_60_9_curated
PLM3-1_170_b1_sep16_scaffold_388_12
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(12590..13087)
DNA (498bp) protein (166aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM3-1_170_b1_sep16_scaffold_388_13
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists

comp(13140..14558)
DNA (1419bp) protein (473aa)
Efflux transporter, RND family, MFP subunit Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LL14_SYNFM
RND family efflux transporter MFP subunit
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM3-1_170_b1_sep16_scaffold_388_14
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14567..15838)
DNA (1272bp) protein (424aa)
Outer membrane efflux protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LL13_SYNFM
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ABK18115.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
PLM3-1_170_b1_sep16_scaffold_388_15
RBG_16_Chloroflexi_64_32_curated, Chloroflexi, Bacteria

Not on your lists

comp(16473..18020)
DNA (1548bp) protein (516aa)
dihydropyrimidine dehydrogenase bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
dihydropyrimidine dehydrogenase subunit A
Tax=RBG_16_Chloroflexi_64_32_curated
PLM3-1_170_b1_sep16_scaffold_388_16
RBG_16_Nitrospirae_43_11_curated, Nitrospirae, Bacteria

Not on your lists

comp(18017..19480)
DNA (1464bp) protein (488aa)
Coproporphyrinogen-III oxidase Tax=uncultured Acidobacteria bacterium RepID=H5S9D2_9BACT
hemN; oxygen-independent coproporphyrinogen III oxidase
Tax=RBG_16_Nitrospirae_43_11_curated
PLM3-1_170_b1_sep16_scaffold_388_17
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(19668..21785)
DNA (2118bp) protein (706aa)
Cytochrome b subunit of formate dehydrogenase-like protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Formate dehydrogenase-like protein cytochrome b subunit
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_388_18
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(21954..23402)
DNA (1449bp) protein (483aa)
Cytochrome c family protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02BX4_SOLUE
cytochrome c family protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_388_19
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(23471..24736)
DNA (1266bp) protein (422aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_388_20
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(24740..25825)
DNA (1086bp) protein (362aa)
Cytochrome bc complex cytochrome b subunit Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLL7_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
petB; cytochrome bc complex cytochrome b subunit
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_388_21
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(25828..26292)
DNA (465bp) protein (155aa)
Plastoquinol--plastocyanin reductase (EC:1.10.9.1)
Putative Plastoquinol--plastocyanin reductase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_388_22
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(26339..26671)
DNA (333bp) protein (111aa)
Cytochrome c, class I Tax=uncultured Acidobacteria bacterium RepID=G8DPL0_9BACT
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM3-1_170_b1_sep16_scaffold_388_23
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26741..27193)
DNA (453bp) protein (151aa)
putative peroxiredoxin OsmC (EC:1.11.1.15)
Putative Peroxiredoxin OsmC Tax=Candidatus Nitrospira defluvii RepID=D8PJJ3_9BACT
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b1_sep16_scaffold_388_24
unknown

Not on your lists

comp(27390..27794)
DNA (405bp) protein (135aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_388_25
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

28117..29604
DNA (1488bp) protein (496aa)
ResB-like protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITP7_KORVE
ResB-like protein
ResB-like protein {ECO:0000313|EMBL:ABF39753.1}; Flags: Precursor;; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM3-1_170_b1_sep16_scaffold_388_26
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

29610..31034
DNA (1425bp) protein (475aa)
Cytochrome c assembly protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ITP6_KORVE
cytochrome c assembly protein
Cytochrome c assembly protein {ECO:0000313|EMBL:ABF39754.1}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM3-1_170_b1_sep16_scaffold_388_27
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

31265..32194
DNA (930bp) protein (310aa)
Putative deca-heme c-type cytochrome Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLL4_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
Displaying 27 items

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