ggKbase home page

PLM3-1_170_b1_sep16_scaffold_1087

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1087_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(3..662)
DNA (660bp) protein (220aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] bin=RBG_19FT_COMBO_GAL15_69_19 species=Cytophaga aurantiaca genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
DNA polymerase LigD, ligase domain protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1087_2
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(806..1762)
DNA (957bp) protein (319aa)
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:ABK18618.1}; EC=1.1.1.31 {ECO:0000313|EMBL:ABK18618.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
hypothetical protein Tax=Fervidibacteria bacterium SCGC AAA471-D06 RepID=UPI000360A538
3-hydroxyisobutyrate dehydrogenase
PLM3-1_170_b1_sep16_scaffold_1087_3
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

1956..4745
DNA (2790bp) protein (930aa)
Uncharacterized protein Tax=uncultured bacterium RepID=L7Y550_9BACT
TPR domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_1087_4

Not on your lists

comp(4757..6349)
DNA (1593bp) protein (531aa)
2-isopropylmalate synthase {ECO:0000313|EMBL:CAX69029.1}; EC=2.3.3.13 {ECO:0000313|EMBL:CAX69029.1};; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
2-isopropylmalate synthase Tax=uncultured bacterium RepID=D6CK22_9BACT
2-isopropylmalate synthase
PLM3-1_170_b1_sep16_scaffold_1087_5
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(6422..7237)
DNA (816bp) protein (272aa)
Uncharacterized protein Tax=Planctomyces maris DSM 8797 RepID=A6CCP7_9PLAN
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_1087_6
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

7447..8736
DNA (1290bp) protein (430aa)
C4-dicarboxylate ABC transporter substrate-binding protein Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A7FAD7
Bug family protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_1087_7
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8724..10214
DNA (1491bp) protein (497aa)
Uncharacterized protein Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZCI9_AZOL4
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
PLM3-1_170_b1_sep16_scaffold_1087_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

10313..10633
DNA (321bp) protein (107aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_1087_9
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

10853..11356
DNA (504bp) protein (168aa)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_1087_10
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

11557..12213
DNA (657bp) protein (219aa)
Serine/threonine protein kinase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XW9_SOLUE
serine/threonine protein kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_1087_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

12867..13301
DNA (435bp) protein (145aa)
DNA polymerase, beta domain protein region bin=GWF2_Methylomirabilis_70_14 species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA polymerase beta domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_1087_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

13301..13729
DNA (429bp) protein (143aa)
Uncharacterized protein Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PQM2_9FIRM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_1087_13
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(15245..15835)
DNA (591bp) protein (197aa)
Putative uncharacterized protein Tax=uncultured marine microorganism HF4000_009L19 RepID=B3T1F1_9ZZZZ
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_1087_14
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(15903..16448)
DNA (546bp) protein (182aa)
hypothetical protein Tax=Methylosinus sp. LW4 RepID=UPI0003680020
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_1087_15
unknown

Not on your lists

16830..17150
DNA (321bp) protein (107aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1087_16
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

17217..17690
DNA (474bp) protein (158aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036D1353
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_1087_17
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(17701..18588)
DNA (888bp) protein (296aa)
Putative von Willebrand factor type A domain protein Tax=uncultured marine microorganism HF4000_APKG10H12 RepID=B3TC79_9ZZZZ
von Willebrand factor A
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM3-1_170_b1_sep16_scaffold_1087_18

Not on your lists

18891..20162
DNA (1272bp) protein (424aa)
Diguanylate cyclase (GGDEF) domain protein Tax=Ralstonia RepID=E2ST23_9RALS
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:AIA11040.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
diguanylate cyclase
PLM3-1_170_b1_sep16_scaffold_1087_19
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(20194..20526)
DNA (333bp) protein (111aa)
Electron transport protein SCO1/SenC Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01Z22_SOLUE
electron transport protein SCO1/SenC
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3-1_170_b1_sep16_scaffold_1087_20
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(20609..21610)
DNA (1002bp) protein (334aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_1087_21
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(21725..22093)
DNA (369bp) protein (123aa)
Anti-sigma factor antagonist Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LG83_CHLTF
anti-anti-sigma factor
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_1087_trna_1
unknown

Not on your lists

comp(22300..22371)
DNA (72bp)
transferRNA His
PLM3-1_170_b1_sep16_scaffold_1087_22
unknown

Not on your lists

comp(22431..22538)
DNA (108bp) protein (36aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1087_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(22565..23728)
DNA (1164bp) protein (388aa)
Major facilitator superfamily MFS_1 bin=GWF2_Lentisphaerae_57_35 species=Aminobacterium colombiense genus=Aminobacterium taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1087_24
Anaeromyxobacter dehalogenans, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23725..24282)
DNA (558bp) protein (186aa)
methylated-DNA--protein-cysteine methyltransferase (EC:2.1.1.63)
Methylated-DNA--protein-cysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; EC=2.1.1.63 {ECO:0000256|HAMAP-Rule:MF_00772};; 6-O-methylguanine-DNA methyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; O-6-methylguanine-DNA-alkyltransferase {ECO:0000256|HAMAP-Rule:MF_00772}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258).;"
Methylated-DNA--protein-cysteine methyltransferase Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JF22_ANAD2
PLM3-1_170_b1_sep16_scaffold_1087_25
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24367..25905)
DNA (1539bp) protein (513aa)
AraC family transcriptional regulator Tax=Sorangium cellulosum So0157-2 RepID=S4XQ39_SORCE
AraC family transcriptional regulator
AraC family transcriptional regulator {ECO:0000313|EMBL:AGP32743.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
PLM3-1_170_b1_sep16_scaffold_1087_26
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(26129..26641)
DNA (513bp) protein (171aa)
hypothetical protein Tax=Deinococcus sp. 2009 RepID=UPI0003B65A19
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1087_27
R_Acidobacteria_60_20, Acidobacteria, Bacteria

Not on your lists

comp(27145..27444)
DNA (300bp) protein (100aa)
Secreted protein bin=GWF2_Ignavibacteria_35_20 species=Gramella forsetii genus=Gramella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_60_20_curated
PLM3-1_170_b1_sep16_scaffold_1087_28
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

27636..29177
DNA (1542bp) protein (514aa)
PQQ-dependent enzyme-like protein Tax=Methylosinus trichosporium OB3b RepID=D5QLP4_METTR
Pyrrolo-quinoline quinone repeat-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM3-1_170_b1_sep16_scaffold_1087_29
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(29302..30009)
DNA (708bp) protein (236aa)
hypothetical protein Tax=Methylosinus sp. LW4 RepID=UPI00036089BD
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Displaying items 1-30 of 32 in total

View Taxonomy