ggKbase home page

PLM3-1_170_b1_sep16_scaffold_1110

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1110_1
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(1..435)
DNA (435bp) protein (145aa)
Sun protein Tax=Alicyclobacillus acidocaldarius (strain Tc-4-1) RepID=F8IHA7_ALIAT
rsmB; sun protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_1110_2
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(461..1444)
DNA (984bp) protein (328aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
methionyl-tRNA formyltransferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_1110_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(1519..2028)
DNA (510bp) protein (170aa)
peptide deformylase bin=CNBR_ACIDO species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptide deformylase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1110_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(2025..3242)
DNA (1218bp) protein (406aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
chorismate synthase (EC:4.2.3.5)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1110_5
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

3343..6975
DNA (3633bp) protein (1211aa)
Fis family transcriptional regulator bin=CNBR_ACIDO species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
two component sigma54 specific Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_1110_6
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(7105..8316)
DNA (1212bp) protein (404aa)
hypothetical protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidase S1 and S6 chymotrypsin/Hap
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_1110_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

8468..9070
DNA (603bp) protein (201aa)
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=CNBR_ACIDO species=Granulicella mallensis genus=Granulicella taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ECF subfamily RNA polymerase sigma-24 subunit
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1110_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

9067..9882
DNA (816bp) protein (272aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1110_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(9860..12112)
DNA (2253bp) protein (751aa)
YD repeat-containing protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
YD repeat-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1110_10
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(12138..13985)
DNA (1848bp) protein (616aa)
hypothetical protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Displaying 10 items

View Taxonomy