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PLM3-1_170_b1_sep16_scaffold_1208

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1208_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(3..461)
DNA (459bp) protein (153aa)
Putative uncharacterized protein Tax=uncultured marine bacterium 105 RepID=Q6SI29_9BACT
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_1208_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(616..1218)
DNA (603bp) protein (201aa)
tdk; thymidine kinase; K00857 thymidine kinase [EC:2.7.1.21] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
thymidine kinase (EC:2.7.1.21)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_1208_3
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(1332..1859)
DNA (528bp) protein (176aa)
Elongation factor P Tax=uncultured marine bacterium 105 RepID=Q6SI28_9BACT
efp; translation elongation factor P
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1208_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

2353..3555
DNA (1203bp) protein (401aa)
Serine protease, HtrA/DegQ/DegS family Tax=uncultured marine bacterium 105 RepID=Q6SI27_9BACT
protease
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_1208_5
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

3552..6194
DNA (2643bp) protein (881aa)
Peptidase M1, membrane alanine aminopeptidase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ISU7_KORVE
peptidase M1, membrane alanine aminopeptidase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_1208_6
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(6228..6539)
DNA (312bp) protein (104aa)
Putative 3-methyladenine DNA glycosylase Tax=uncultured marine bacterium 105 RepID=Q6SI26_9BACT
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_1208_7
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7254..7670
DNA (417bp) protein (139aa)
Uncharacterized protein Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P303_AROAE
Uncharacterized protein {ECO:0000313|EMBL:CAI08311.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
PLM3-1_170_b1_sep16_scaffold_1208_8
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

9809..10528
DNA (720bp) protein (240aa)
hypothetical protein Tax=Dyella ginsengisoli RepID=UPI00034544F3
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_1208_9
Gloeobacter kilaueensis, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

10678..11904
DNA (1227bp) protein (409aa)
Outer membrane efflux protein Tax=Gloeobacter kilaueensis JS1 RepID=U5QQV4_9CYAN
tolC; outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:AGY60090.1}; species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter kilaueensis JS1.;"
PLM3-1_170_b1_sep16_scaffold_1208_10
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11901..13040
DNA (1140bp) protein (380aa)
efflux transporter, rnd family, mfp subunit bin=CNBR_ACIDO species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Membrane fusion protein {ECO:0000313|EMBL:EDM78209.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
RND family efflux transporter MFP subunit
PLM3-1_170_b1_sep16_scaffold_1208_11
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

13037..16072
DNA (3036bp) protein (1012aa)
Acriflavin resistance protein Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) RepID=B2JBH6_NOSP7
acriflavin resistance protein
Acriflavin resistance protein {ECO:0000313|EMBL:AHG89501.1}; species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
PLM3-1_170_b1_sep16_scaffold_1208_12
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16132..17253
DNA (1122bp) protein (374aa)
Lysophospholipase Tax=Polaromonas sp. CF318 RepID=J3DD34_9BURK
Lysophospholipase {ECO:0000313|EMBL:EJL89481.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_1208_13
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(17505..20468)
DNA (2964bp) protein (988aa)
Putative Cna B-type protein Tax=uncultured Acidobacteria bacterium cosmid p2H8 RepID=B1NMD3_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_1208_14
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(20741..22540)
DNA (1800bp) protein (600aa)
Xanthine dehydrogenase Tax=Desulfovibrio sp. FW1012B RepID=G7QC05_9DELT
xanthine dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_1208_15
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(23132..23770)
DNA (639bp) protein (213aa)
(2Fe-2S)-binding domain-containing protein Tax=Desulfovibrio sp. X2 RepID=S7TXX7_9DELT
aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_1208_16
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(24005..24982)
DNA (978bp) protein (326aa)
von Willebrand factor A bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Mg-chelatase subunit ChlD
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_1208_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

25247..26311
DNA (1065bp) protein (355aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1208_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

26308..27045
DNA (738bp) protein (246aa)
TRAP dicarboxylate transporter subunit DctP bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
TRAP dicarboxylate transporter subunit DctP
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1208_19
unknown

Not on your lists

27027..27215
DNA (189bp) protein (63aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1208_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

27212..28498
DNA (1287bp) protein (429aa)
TRAP dicarboxylate transporter, DctM subunit Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LLP7_SYNFM bin=16ft_combo_ws3_JS1 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
Displaying 20 items

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