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PLM3-1_170_b1_sep16_scaffold_1457

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1457_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(2..760)
DNA (759bp) protein (253aa)
hypothetical protein bin=CNBR_ACIDO species=Thermococcus sp. genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
PKD domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1457_2
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(785..1438)
DNA (654bp) protein (218aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_1457_3
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(1449..3851)
DNA (2403bp) protein (801aa)
type IV pilus secretin PilQ; K02666 type IV pilus assembly protein PilQ bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
type II and III secretion system protein, secretin
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_1457_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(3848..4366)
DNA (519bp) protein (173aa)
Type IV pilus assembly protein PilP Tax=uncultured prokaryote RepID=H5SKW4_9ZZZZ
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_1457_5
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(4371..4961)
DNA (591bp) protein (197aa)
fimbrial assembly protein PilO; K02664 type IV pilus assembly protein PilO bin=CNBR_ACIDO species=Geopsychrobacter electrodiphilus genus=Geopsychrobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1457_6
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(5017..5589)
DNA (573bp) protein (191aa)
Pili assembly protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_1457_7
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(5586..6719)
DNA (1134bp) protein (378aa)
Type IV pilus biogenesis protein PilM Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TZ03_9DELT
pilM; type IV pilus biogenesis protein PilM
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_1457_8
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists


7020..7451
DNA (432bp) protein (144aa)
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13 bin=CNBR_ACIDO species=Marinitoga piezophila genus=Marinitoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
50S ribosomal protein L13
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_1457_9
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


7453..7845
DNA (393bp) protein (131aa)
30S ribosomal protein S9 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGN9_CHLTF
30S ribosomal protein S9
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_1457_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists


7893..8687
DNA (795bp) protein (265aa)
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpsB; 30S ribosomal protein S2
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1457_11
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

8873..9478
DNA (606bp) protein (202aa)
translation elongation factor Ts; K02357 elongation factor Ts bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
tsf; elongation factor Ts
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_1457_12
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9531..10247
DNA (717bp) protein (239aa)
pyrH; uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] bin=CNBR_ACIDO species=Geobacter bemidjiensis genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pyrH; uridylate kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_1457_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

10299..10868
DNA (570bp) protein (190aa)
ribosome recycling factor; K02838 ribosome recycling factor bin=CNBR_ACIDO species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribosome recycling factor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_1457_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(10896..11987)
DNA (1092bp) protein (364aa)
phosphofructokinase (EC:2.7.1.11); K00850 6-phosphofructokinase [EC:2.7.1.11] bin=CNBR_ACIDO species=Herbaspirillum sp. JC206 genus=Herbaspirillum taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphofructokinase (EC:2.7.1.11)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1457_trna_1
unknown

Not on your lists

12020..12092
DNA (73bp)
transferRNA Ala
PLM3-1_170_b1_sep16_scaffold_1457_15
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(12212..12610)
DNA (399bp) protein (133aa)
Toxin-antitoxin system, toxin component, PIN family Tax=delta proteobacterium NaphS2 RepID=D8FE21_9DELT
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM3-1_170_b1_sep16_scaffold_1457_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12610..12897)
DNA (288bp) protein (96aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
prevent-host-death family protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM3-1_170_b1_sep16_scaffold_1457_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

13229..14083
DNA (855bp) protein (285aa)
hypothetical protein bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_1457_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

14718..15050
DNA (333bp) protein (111aa)
DNA polymerase, beta-like region Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RI65_MOOTA
DNA polymerase, beta-like region
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1457_19
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(15478..15681)
DNA (204bp) protein (68aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Oscillatoria taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1457_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(16487..16855)
DNA (369bp) protein (123aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_1457_21
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17261..18058
DNA (798bp) protein (266aa)
Uncharacterized protein Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LCT0_RALME
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF12046.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
Displaying 22 items

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