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PLM3-1_170_b1_sep16_scaffold_6

Search features with annotation key words

Displaying items 1-30 of 79 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_6_1
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(76..459)
DNA (384bp) protein (128aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_6_2
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(539..1966)
DNA (1428bp) protein (476aa)
hypothetical protein
heavy metal sensor signal transduction histidine kinase bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_6_3
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(1963..2697)
DNA (735bp) protein (245aa)
Two component transcriptional regulator, winged helix family Tax=Caldithrix abyssi DSM 13497 RepID=H1XYA6_9BACT
winged helix family two component transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_6_4
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(3097..3987)
DNA (891bp) protein (297aa)
ROK family protein Tax=Oceanibaculum indicum P24 RepID=K2KFG9_9PROT
ROK family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_6_5
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(4059..4637)
DNA (579bp) protein (193aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P8V9_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK43941.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM3-1_170_b1_sep16_scaffold_6_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

4824..6416
DNA (1593bp) protein (531aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_6_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

6459..7205
DNA (747bp) protein (249aa)
Putative uncharacterized protein Tax=uncultured Acidobacteriales bacterium HF0200_23L05 RepID=E0XUL0_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_6_8
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

7228..7944
DNA (717bp) protein (239aa)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_6_9
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

7947..8729
DNA (783bp) protein (261aa)
SAM-dependent methyltransferases Tax=uncultured Acidobacteriales bacterium HF0200_23L05 RepID=E0XUJ3_9BACT
type 12 methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_6_10
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

8818..9567
DNA (750bp) protein (250aa)
YebC/PmpR family DNA-binding regulatory protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_6_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

9564..10094
DNA (531bp) protein (177aa)
ruvC; Holliday junction resolvase (EC:3.1.22.4); K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] bin=CNBR_ACIDO species=Chloroflexus aggregans genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
crossover junction endodeoxyribonuclease RuvC
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_6_12
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

10094..10687
DNA (594bp) protein (198aa)
Holliday junction ATP-dependent DNA helicase RuvA Tax=uncultured Acidobacteriales bacterium HF0200_23L05 RepID=E0XUI8_9BACT
Holliday junction ATP-dependent DNA helicase ruvA
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_6_13
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

10709..11728
DNA (1020bp) protein (340aa)
Holliday junction ATP-dependent DNA helicase RuvB Tax=uncultured Acidobacteriales bacterium HF0200_23L05 RepID=E0XUI7_9BACT
ruvB; Holliday junction DNA helicase RuvB
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_6_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

11722..12762
DNA (1041bp) protein (347aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 Tax=uncultured Acidobacteriales bacterium HF0200_23L05 RepID=E0XUI6_9BACT
3-oxoacyl-(acyl-carrier-protein) synthase III
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_6_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

13381..15504
DNA (2124bp) protein (708aa)
intracellular alkaline serine proteinase
subtilisin-like serine protease bin=CNBR_ACIDO species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_6_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

15504..16175
DNA (672bp) protein (224aa)
GCN5-related N-acetyltransferase Tax=Ktedonobacter racemifer DSM 44963 RepID=D6U0E2_9CHLR
GCN5-related N-acetyltransferase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_6_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

16285..17379
DNA (1095bp) protein (365aa)
S-adenosylmethionine:tRNA-ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
S-adenosylmethionine:tRNAribosyltransferase-isomerase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_6_trna_1
unknown

Not on your lists

17414..17486
DNA (73bp)
transferRNA Met
PLM3-1_170_b1_sep16_scaffold_6_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

17544..18971
DNA (1428bp) protein (476aa)
tRNA(Ile)-lysidine synthase Tax=uncultured Acidobacteriales bacterium HF0200_23L05 RepID=E0XUI4_9BACT
tRNA(Ile)-lysidine synthetase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_6_19
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

18968..20890
DNA (1923bp) protein (641aa)
ATP-dependent zinc metalloprotease FtsH Tax=uncultured Acidobacteriales bacterium HF0200_23L05 RepID=E0XUI3_9BACT
FtsH peptidase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_6_20
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

20957..21844
DNA (888bp) protein (296aa)
Dihydropteroate synthase and related enzymes Tax=uncultured Acidobacteriales bacterium HF0200_23L05 RepID=E0XUI2_9BACT
dihydropteroate synthase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_6_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

21919..22743
DNA (825bp) protein (275aa)
hypothetical protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
membrane protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_6_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

22743..23654
DNA (912bp) protein (304aa)
YbbR-like protein Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IV18_KORVE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_6_23
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

23693..25027
DNA (1335bp) protein (445aa)
phosphoglucosamine mutase (EC:5.4.2.10); K03431 phosphoglucosamine mutase [EC:5.4.2.10] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
phosphoglucosamine mutase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_6_24
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

25030..25764
DNA (735bp) protein (245aa)
pyridoxine 5'-phosphate synthase (EC:2.6.99.2) bin=CNBR_ACIDO species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pyridoxine 5'-phosphate synthase (EC:2.6.99.2)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_6_25
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

25797..26465
DNA (669bp) protein (223aa)
hypothetical protein bin=CNBR_ACIDO species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_6_26
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

26798..27679
DNA (882bp) protein (294aa)
class II aldolase/adducin family protein bin=CNBR_ACIDO species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
class II aldolase/adducin family protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_6_27
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

27693..27983
DNA (291bp) protein (97aa)
microcompartments protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
microcompartments protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM3-1_170_b1_sep16_scaffold_6_28
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

27985..28254
DNA (270bp) protein (90aa)
ethanolamine utilization protein EutN/carboxysome structural protein Ccml bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ethanolamine utilization protein EutN/carboxysome structural protein Ccml
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_6_29
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

28261..28608
DNA (348bp) protein (116aa)
ethanolamine utilization protein EutN/carboxysome structural protein Ccml; K04028 ethanolamine utilization protein EutN bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ethanolamine utilization protein EutN/carboxysome structural protein Ccml
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
Displaying items 1-30 of 79 in total

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