ggKbase home page

PLM3-1_170_b1_sep16_scaffold_12

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_12_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2..253
DNA (252bp) protein (84aa)
DNA modification methylase bin=GWF2_Methylomirabilis_70_14 species=Nostoc sp. genus=Nostoc taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA methylase N-4/N-6
Tax=GWA2_Rokubacteria_70_23_curated
PLM3-1_170_b1_sep16_scaffold_12_2
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

344..1213
DNA (870bp) protein (290aa)
id=4262056 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
PLM3-1_170_b1_sep16_scaffold_12_3
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

1445..2260
DNA (816bp) protein (272aa)
Uncharacterized protein Tax=Belliella baltica (strain DSM 15883 / CIP 108006 / LMG 21964 / BA134) RepID=I3Z5U9_BELBD
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_12_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

2397..3173
DNA (777bp) protein (259aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] bin=CNBR_ACIDO species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_12_5
unknown

Not on your lists

comp(3121..3423)
DNA (303bp) protein (101aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_12_6
BJP_IG2102_BRC1_58_13, BRC1, Bacteria

Not on your lists

3632..3943
DNA (312bp) protein (104aa)
hypothetical protein Tax=Anaeromusa acidaminophila RepID=UPI00036D5CF0
UDP-glucose 4-epimerase
Tax=BJP_IG2102_BRC1_58_13
PLM3-1_170_b1_sep16_scaffold_12_7
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3940..4611
DNA (672bp) protein (224aa)
UDP-glucose 4-epimerase Tax=Cystobacter fuscus DSM 2262 RepID=S9QUP6_9DELT
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EPX60383.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
UDP-glucose-4-epimerase
PLM3-1_170_b1_sep16_scaffold_12_8
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

4663..7437
DNA (2775bp) protein (925aa)
DEAD/DEAH box helicase; K06877 DEAD/DEAH box helicase domain-containing protein bin=CNBR_ACIDO species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
helicase family protein with metal-binding cysteine cluster
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_12_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

7489..8811
DNA (1323bp) protein (441aa)
hypothetical protein; K07502 hypothetical protein bin=CNBR_ACIDO species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_12_10
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists


comp(8838..9101)
DNA (264bp) protein (88aa)
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 bin=CNBR_ACIDO species=Slackia heliotrinireducens genus=Slackia taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
50S ribosomal protein L31
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_12_11
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(9185..10579)
DNA (1395bp) protein (465aa)
rho; transcription termination factor Rho; K03628 transcription termination factor Rho bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rho; transcription termination factor Rho
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_12_12
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(10543..11148)
DNA (606bp) protein (202aa)
GTP-binding protein HSR1-related; K03978 GTP-binding protein bin=CNBR_ACIDO species=Paenibacillus lactis genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribosome biogenesis GTP-binding protein YsxC/EngB
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM3-1_170_b1_sep16_scaffold_12_13
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists

comp(11206..13599)
DNA (2394bp) protein (798aa)
Lon-A peptidase (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Lon-A peptidase (EC:3.4.21.53)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM3-1_170_b1_sep16_scaffold_12_14
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(13645..14901)
DNA (1257bp) protein (419aa)
ATP-dependent Clp protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ATP-dependent Clp protease ATP-binding subunit ClpX
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM3-1_170_b1_sep16_scaffold_12_15
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(14904..15491)
DNA (588bp) protein (196aa)
clpP; ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
clpP; ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_12_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(15613..16887)
DNA (1275bp) protein (425aa)
trigger factor; K03545 trigger factor bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
trigger factor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_12_trna_1
unknown

Not on your lists

comp(17022..17105)
DNA (84bp)
transferRNA Leu
PLM3-1_170_b1_sep16_scaffold_12_17
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

17696..18916
DNA (1221bp) protein (407aa)
id=12556218 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM3-1_170_b1_sep16_scaffold_12_18
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

Not on your lists

18920..19735
DNA (816bp) protein (272aa)
Exopolysaccharide biosynthesis protein Tax=planctomycete KSU-1 RepID=I3IJX5_9PLAN
periplasmic protein involved in polysaccharide export
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM3-1_170_b1_sep16_scaffold_12_19
R_NC10_66_22, NC10, Bacteria

Not on your lists

19764..20924
DNA (1161bp) protein (387aa)
lipopolysaccharide biosynthesis protein Tax=Burkholderia bryophila RepID=UPI000366AEEA
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM3-1_170_b1_sep16_scaffold_12_20
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

20921..21628
DNA (708bp) protein (236aa)
hypothetical protein Tax=Chlorogloeopsis fritschii RepID=UPI0002E5A71E
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_12_21
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

21625..22878
DNA (1254bp) protein (418aa)
Uncharacterized protein Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CJB6_MYXFH
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_12_22
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

22929..24143
DNA (1215bp) protein (405aa)
Group 1 glycosyl transferase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U4H7_MYXSD
group 1 glycosyl transferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM3-1_170_b1_sep16_scaffold_12_23
RIFOXYB2_FULL_Elusimicrobia_49_7_curated, Elusimicrobia, Bacteria

Not on your lists

24164..25231
DNA (1068bp) protein (356aa)
hypothetical protein Tax=Humibacter albus RepID=UPI0003B4576F
group 1 glycosyl transferase
Tax=RIFOXYB2_FULL_Elusimicrobia_49_7_curated
PLM3-1_170_b1_sep16_scaffold_12_24
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

25206..26675
DNA (1470bp) protein (490aa)
Uncharacterized protein Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HLI8_CYAP4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL43476.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 7425 / ATCC 29141).;"
PLM3-1_170_b1_sep16_scaffold_12_25
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26636..28219
DNA (1584bp) protein (528aa)
hypothetical protein Tax=Gemmata obscuriglobus RepID=UPI00016C4F89
Uncharacterized protein {ECO:0000313|EMBL:KFA89586.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
polysaccharide biosynthesis protein
PLM3-1_170_b1_sep16_scaffold_12_26
Anabaena cylindrica, Anabaena, Nostocales, Cyanobacteria, Bacteria

Not on your lists

28216..29187
DNA (972bp) protein (324aa)
Uncharacterized protein Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) RepID=K9ZKT9_ANACC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ59167.1}; species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena.;" source="Anabaena cylindrica (strain ATCC 27899 / PCC 7122).;"
PLM3-1_170_b1_sep16_scaffold_12_27
RIFOXYD2_FULL_PER_ii_58_15_curated, PER-ii, Bacteria

Not on your lists

29190..30008
DNA (819bp) protein (273aa)
Tax=RIFOXYD2_FULL_PER_ii_58_15_curated
PLM3-1_170_b1_sep16_scaffold_12_28
Leptonema illini, Leptonema, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

30028..31017
DNA (990bp) protein (330aa)
Methyltransferase type 11 Tax=Leptonema illini DSM 21528 RepID=H2CK14_9LEPT
Methyltransferase type 11 {ECO:0000313|EMBL:EHQ06103.1}; species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptonema.;" source="Leptonema illini DSM 21528.;"
type 12 methyltransferase
PLM3-1_170_b1_sep16_scaffold_12_29
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

31152..32111
DNA (960bp) protein (320aa)
glycosyltransferase (group 1) Tax=Gemmata obscuriglobus RepID=UPI00016C4D7E
glycosyltransferase (group 1)
Tax=CG_Arma_01
Displaying items 1-30 of 57 in total

View Taxonomy