ggKbase home page

PLM3-1_170_b1_sep16_scaffold_12475

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_12475_1
CSP1_5_NC10, NC10, Bacteria

Not on your lists


3..1001
DNA (999bp) protein (333aa)
signal recognition particle subunit FFH/SRP54 (srp54); K03106 signal recognition particle subunit SRP54 bin=bin3_NC10 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
ffh; signal recognition particle GTPase Ffh
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_12475_2
CSP1_5_NC10, NC10, Bacteria

Not on your lists


1037..1318
DNA (282bp) protein (94aa)
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 bin=bin3_NC10 species=Leuconostoc lactis genus=Leuconostoc taxon_order=Lactobacillales taxon_class=Bacilli phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
30S ribosomal protein S16
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_12475_3
CSP1_5_NC10, NC10, Bacteria

Not on your lists

1412..1645
DNA (234bp) protein (78aa)
hypothetical protein; K06960 bin=bin3_NC10 species=Desulfovibrio oxyclinae genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
RNA-binding protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_12475_4
CSP1_5_NC10, NC10, Bacteria

Not on your lists

1649..2173
DNA (525bp) protein (175aa)
rimM; 16S rRNA processing protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
rimM; 16S rRNA processing protein
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_12475_5
CSP1_5_NC10, NC10, Bacteria

Not on your lists

2196..2933
DNA (738bp) protein (246aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] bin=bin3_NC10 species=Dictyoglomus turgidum genus=Dictyoglomus taxon_order=Dictyoglomales taxon_class=Dictyoglomia phylum=Dictyoglomi tax=bin3_NC10 organism_group=NC10
trmD; tRNA (guanine-N(1)-)-methyltransferase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_12475_6
CSP1_5_NC10, NC10, Bacteria

Not on your lists


2920..3291
DNA (372bp) protein (124aa)
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 bin=bin3_NC10 species=Alicyclobacillus acidoterrestris genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
rplS; 50S ribosomal protein L19
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_12475_7
CSP1_5_NC10, NC10, Bacteria

Not on your lists

3382..4011
DNA (630bp) protein (210aa)
rnhB; ribonuclease HII (EC:3.1.26.4); K03470 ribonuclease HII [EC:3.1.26.4] bin=bin3_NC10 species=Bacillus atrophaeus genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
rnhB; ribonuclease HII (EC:3.1.26.4)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_12475_8
CSP1_5_NC10, NC10, Bacteria

Not on your lists

4005..4088
DNA (84bp) protein (28aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
Tax=CSP1_5_NC10
Displaying 8 items

View Taxonomy