ggKbase home page

PLM3-1_170_b1_sep16_scaffold_603

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_603_1
CSP1_5_NC10, NC10, Bacteria

Not on your lists

1..537
DNA (537bp) protein (179aa)
Membrane-associated phospholipid phosphatase bin=bin3_NC10 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=bin3_NC10 organism_group=NC10
Membrane-associated phospholipid phosphatase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_2
CSP1_5_NC10, NC10, Bacteria

Not on your lists

612..1700
DNA (1089bp) protein (363aa)
polyprenyl synthetase bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
polyprenyl synthetase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_3
CSP1_5_NC10, NC10, Bacteria

Not on your lists

1694..2695
DNA (1002bp) protein (334aa)
lipopolysaccharide heptosyltransferase I; K02841 heptosyltransferase I [EC:2.4.-.-] bin=bin3_NC10 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
lipopolysaccharide heptosyltransferase I
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_4
CSP1_5_NC10, NC10, Bacteria

Not on your lists

2692..4539
DNA (1848bp) protein (616aa)
lepA; GTP-binding elongation factor bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
lepA; GTP-binding elongation factor
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_5
CSP1_5_NC10, NC10, Bacteria

Not on your lists

4580..5251
DNA (672bp) protein (224aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] bin=bin3_NC10 species=Thermodesulfatator atlanticus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin3_NC10 organism_group=NC10
signal peptidase I (EC:3.4.21.89)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_6
CSP1_5_NC10, NC10, Bacteria

Not on your lists

5472..6521
DNA (1050bp) protein (350aa)
hrcA; Heat-inducible transcription repressor bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hrcA; Heat-inducible transcription repressor
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_7
CSP1_5_NC10, NC10, Bacteria

Not on your lists

6597..7184
DNA (588bp) protein (196aa)
grpE; protein grpE (HSP-70 cofactor) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
grpE; protein grpE (HSP-70 cofactor)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_8
CSP1_5_NC10, NC10, Bacteria

Not on your lists

7177..8289
DNA (1113bp) protein (371aa)
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_9
CSP1_5_NC10, NC10, Bacteria

Not on your lists

8273..9025
DNA (753bp) protein (251aa)
Ribosomal RNA small subunit methyltransferase E; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] bin=bin3_NC10 species=Halomonas sp. A3H3 genus=Halomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
Ribosomal RNA small subunit methyltransferase E
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_10
CSP1_5_NC10, NC10, Bacteria

Not on your lists

9032..9913
DNA (882bp) protein (294aa)
polA; DNA polymerase I (EC:2.7.7.7) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
polA; DNA polymerase I (EC:2.7.7.7)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_11
CSP1_5_NC10, NC10, Bacteria

Not on your lists

9918..10529
DNA (612bp) protein (204aa)
coaE; dephospho-CoA kinase (EC:2.7.1.24) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
coaE; dephospho-CoA kinase (EC:2.7.1.24)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_12
CSP1_5_NC10, NC10, Bacteria

Not on your lists

10837..12204
DNA (1368bp) protein (456aa)
rho; transcription termination factor Rho bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
rho; transcription termination factor Rho
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_13
CSP1_5_NC10, NC10, Bacteria

Not on your lists


12336..12551
DNA (216bp) protein (72aa)
LSU ribosomal protein L31P bin=bin3_NC10 species=Subdoligranulum variabile genus=Subdoligranulum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
LSU ribosomal protein L31P
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_14
CSP1_5_NC10, NC10, Bacteria

Not on your lists

12605..13687
DNA (1083bp) protein (361aa)
prfA; peptide chain release factor 1 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
prfA; peptide chain release factor 1
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_15
CSP1_5_NC10, NC10, Bacteria

Not on your lists

13745..14656
DNA (912bp) protein (304aa)
protein-(glutamine-N5) methyltransferase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-] bin=bin3_NC10 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin3_NC10 organism_group=NC10
HemK family modification methylase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_16
CSP1_5_NC10, NC10, Bacteria

Not on your lists

14646..15914
DNA (1269bp) protein (423aa)
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase 1) (UDP-N-acetylglucosamine enolpyruvyl transferase 1) (EPT 1) (EC:2.5.1.7) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase 1) (UDP-N-acetylglucosamine enolpyruvyl transferase 1) (EPT 1) (EC:2.5.1.7)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_17
CSP1_5_NC10, NC10, Bacteria

Not on your lists

15915..16571
DNA (657bp) protein (219aa)
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hisG; ATP phosphoribosyltransferase (EC:2.4.2.17)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_18
CSP1_5_NC10, NC10, Bacteria

Not on your lists

16568..17857
DNA (1290bp) protein (430aa)
hisD; histidinol dehydrogenase (EC:1.1.1.23) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hisD; histidinol dehydrogenase (EC:1.1.1.23)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_19
CSP1_5_NC10, NC10, Bacteria

Not on your lists

17870..18250
DNA (381bp) protein (127aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hisB; Imidazoleglycerol-phosphate dehydratase
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_20
CSP1_5_NC10, NC10, Bacteria

Not on your lists

18214..18507
DNA (294bp) protein (98aa)
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hisB; imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_21
CSP1_5_NC10, NC10, Bacteria

Not on your lists

18654..19241
DNA (588bp) protein (196aa)
hisH; imidazole glycerol phosphate synthase subunit HisH; K02501 glutamine amidotransferase [EC:2.4.2.-] bin=bin3_NC10 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hisH; imidazole glycerol phosphate synthase subunit HisH
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_22
CSP1_5_NC10, NC10, Bacteria

Not on your lists

19360..20097
DNA (738bp) protein (246aa)
hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase (EC:5.3.1.16) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hisA; N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase (EC:5.3.1.16)
Tax=CSP1_5_NC10
PLM3-1_170_b1_sep16_scaffold_603_23
CSP1_5_NC10, NC10, Bacteria

Not on your lists

20091..20879
DNA (789bp) protein (263aa)
hisF; imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hisF; imidazole glycerol phosphate synthase subunit HisF (EC:4.1.3.-)
Tax=CSP1_5_NC10
Displaying 23 items

View Taxonomy