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PLM3-1_170_b1_sep16_scaffold_5544

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_5544_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2..379)
DNA (378bp) protein (126aa)
rRNA methylase (EC:2.1.1.185)
RNA methyltransferase, TrmH family, group 3 bin=GWD2_Deltaproteobacteria_55_8 species=Paenibacillus sp. genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b1_sep16_scaffold_5544_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

503..1711
DNA (1209bp) protein (403aa)
Permease YjgP/YjgQ family protein bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
YjgP/YjgQ family permease
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b1_sep16_scaffold_5544_3
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1713..2828
DNA (1116bp) protein (372aa)
Permease bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
permease
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM3-1_170_b1_sep16_scaffold_5544_4
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2841..3920)
DNA (1080bp) protein (360aa)
argC; N-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b1_sep16_scaffold_5544_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3917..4309)
DNA (393bp) protein (131aa)
30S ribosomal protein S9 bin=GWD2_Deltaproteobacteria_55_8 species=Idiomarina xiamenensis genus=Idiomarina taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
30S ribosomal protein S9
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b1_sep16_scaffold_5544_6
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4320..4760)
DNA (441bp) protein (147aa)
50S ribosomal protein L13 bin=GWD2_Deltaproteobacteria_55_8 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rplM; 50S ribosomal protein L13
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b1_sep16_scaffold_5544_trna_2
unknown

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comp(4833..4906)
DNA (74bp)
transferRNA Asp
PLM3-1_170_b1_sep16_scaffold_5544_trna_1
unknown

Not on your lists

comp(4999..5070)
DNA (72bp)
transferRNA Val
PLM3-1_170_b1_sep16_scaffold_5544_7
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5174..5446)
DNA (273bp) protein (91aa)
Histone family protein DNA-binding protein bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hup-2; histone-like protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b1_sep16_scaffold_5544_8
BJP_IG2069_Clostridiales_42_11, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5632..7707)
DNA (2076bp) protein (692aa)
lon; ATP-dependent protease LA (EC:3.4.21.53)
Lon protease Tax=Rhodobacteraceae bacterium HTCC2150 RepID=A3JS63_9RHOB
Tax=BJP_IG2069_Clostridiales_42_11
PLM3-1_170_b1_sep16_scaffold_5544_9
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7701..7892)
DNA (192bp) protein (64aa)
lon; ATP-dependent protease La (EC:3.4.21.53)
Lon protease bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM3-1_170_b1_sep16_scaffold_5544_10
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7904..9157)
DNA (1254bp) protein (418aa)
ATP-dependent Clp protease ATP-binding subunit ClpX bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
clpX; ATP-dependent protease ATP-binding subunit ClpX
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
PLM3-1_170_b1_sep16_scaffold_5544_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9170..9772)
DNA (603bp) protein (201aa)
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit bin=GWD2_Deltaproteobacteria_55_8 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM3-1_170_b1_sep16_scaffold_5544_12
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9803..11143)
DNA (1341bp) protein (447aa)
Trigger factor bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
trigger factor
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Displaying 14 items

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