ggKbase home page

PLM3-1_170_b1_sep16_scaffold_1368

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1368_1
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(1..222)
DNA (222bp) protein (74aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 /; UNI-1).;"
DNA-directed RNA polymerase subunit alpha bin=GWB2_Chloroflexi_49_20 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
PLM3-1_170_b1_sep16_scaffold_1368_2
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists


comp(406..1044)
DNA (639bp) protein (213aa)
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rpsD; 30S ribosomal protein S4
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM3-1_170_b1_sep16_scaffold_1368_3
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists


comp(1055..1321)
DNA (267bp) protein (89aa)
30S ribosomal protein S11 Tax=Thermovirga lienii (strain ATCC BAA-1197 / DSM 17291 / Cas60314) RepID=G7V8W7_THELD
30S ribosomal protein S11
Tax=RBG_16_Chloroflexi_54_18_curated
PLM3-1_170_b1_sep16_scaffold_1368_4
RBG_16_Chloroflexi_64_43_curated, Chloroflexi, Bacteria

Not on your lists


comp(1411..1800)
DNA (390bp) protein (130aa)
30S ribosomal protein S13 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N3P8_ANATU
rpsM; 30S ribosomal protein S13
Tax=RBG_16_Chloroflexi_64_43_curated
PLM3-1_170_b1_sep16_scaffold_1368_5
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(2012..2827)
DNA (816bp) protein (272aa)
map; methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 /; UNI-1).;"
Methionine aminopeptidase Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N3P6_ANATU
PLM3-1_170_b1_sep16_scaffold_1368_6
CG_Anaero_03, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(2843..3520)
DNA (678bp) protein (226aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
Tax=CG_Anaero_03
PLM3-1_170_b1_sep16_scaffold_1368_7
RBG_16_Chloroflexi_64_43_curated, Chloroflexi, Bacteria

Not on your lists


comp(3562..4908)
DNA (1347bp) protein (449aa)
atm:ANT_10240 secY; preprotein translocase secY subunit; K03076 preprotein translocase subunit SecY bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
secY; preprotein translocase secY subunit
Tax=RBG_16_Chloroflexi_64_43_curated
PLM3-1_170_b1_sep16_scaffold_1368_8
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists


comp(4905..5348)
DNA (444bp) protein (148aa)
rplO; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rplO; 50S ribosomal protein L15
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_1368_9
BJP_IG2069_Anaerolineales_43_63, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists


comp(5345..5542)
DNA (198bp) protein (66aa)
50S ribosomal protein L30 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N3P2_ANATU
rpmD; 50S ribosomal protein L30
Tax=BJP_IG2069_Anaerolineales_43_63
PLM3-1_170_b1_sep16_scaffold_1368_10
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists


comp(5535..6089)
DNA (555bp) protein (185aa)
rpsE; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rpsE; 30S ribosomal protein S5
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_1368_11
RIFOXYC12_FULL_Chloroflexi_59_14_curated, Chloroflexi, Bacteria

Not on your lists


comp(6118..6480)
DNA (363bp) protein (121aa)
50S ribosomal protein L18 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N3P0_ANATU
rplR; 50S ribosomal protein L18
Tax=RIFOXYC12_FULL_Chloroflexi_59_14_curated
PLM3-1_170_b1_sep16_scaffold_1368_12
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists


comp(6483..7028)
DNA (546bp) protein (182aa)
rplF; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rplF; 50S ribosomal protein L6
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1368_13
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists


comp(7067..7480)
DNA (414bp) protein (138aa)
30S ribosomal protein S8 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N3N8_ANATU
rpsH; 30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 /; UNI-1).;"
PLM3-1_170_b1_sep16_scaffold_1368_14
RBG_13_Chloroflexi_60_9_curated, Chloroflexi, Bacteria

Not on your lists


comp(7503..7685)
DNA (183bp) protein (61aa)
rpsN; 30S ribosomal protein S14; K02954 small subunit ribosomal protein S14 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rpsN; 30S ribosomal protein S14
Tax=RBG_13_Chloroflexi_60_9_curated
PLM3-1_170_b1_sep16_scaffold_1368_15
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists


comp(7693..8241)
DNA (549bp) protein (183aa)
rplE; 50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rplE; 50S ribosomal protein L5
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_1368_16
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists


comp(8273..8602)
DNA (330bp) protein (110aa)
rplX; 50S ribosomal protein L24; K02895 large subunit ribosomal protein L24 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rplX; 50S ribosomal protein L24
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_1368_17
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists


comp(8623..8994)
DNA (372bp) protein (124aa)
50S ribosomal protein L14 bin=GWD2_Chloroflexi_49_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
rplN; 50S ribosomal protein L14
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_1368_18
BJP_08E140C01_Anaerolineales_40_8, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists


comp(8991..9314)
DNA (324bp) protein (108aa)
30S ribosomal protein S17 bin=GWD2_Chloroflexi_49_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
rpsQ; 30S ribosomal protein S17
Tax=BJP_08E140C01_Anaerolineales_40_8
PLM3-1_170_b1_sep16_scaffold_1368_19
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists


comp(9311..9538)
DNA (228bp) protein (76aa)
rpmC; 50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
50S ribosomal protein L29
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_1368_20
CG_Anaero_01, Anaerolineae, Chloroflexi, Bacteria

Not on your lists


comp(9540..9965)
DNA (426bp) protein (142aa)
50S ribosomal protein L16 bin=GWD2_Chloroflexi_49_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
50S ribosomal protein L16
Tax=CG_Anaero_01
PLM3-1_170_b1_sep16_scaffold_1368_21
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists


comp(10040..10714)
DNA (675bp) protein (225aa)
atm:ANT_10100 rpsC; 30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rpsC; 30S ribosomal protein S3
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1368_22
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists


comp(10717..11076)
DNA (360bp) protein (120aa)
rplV; 50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rplV; 50S ribosomal protein L22
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1368_23
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists


comp(11081..11392)
DNA (312bp) protein (104aa)
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rpsS; 30S ribosomal protein S19
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_1368_24
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists


comp(11396..12232)
DNA (837bp) protein (279aa)
50S ribosomal protein L2 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N3M7_ANATU
rplB; 50S ribosomal protein L2
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_1368_25
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists


comp(12232..12534)
DNA (303bp) protein (101aa)
50S ribosomal protein L23 Tax=Anaerolinea thermophila UNI-1 RepID=E8N3M6_ANATU bin=RBG9 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rplW; 50S ribosomal protein L23
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM3-1_170_b1_sep16_scaffold_1368_26
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists


comp(12551..13171)
DNA (621bp) protein (207aa)
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
rplD; 50S ribosomal protein L4
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1368_27
Anaerolinea thermophila, Anaerolinea, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists


comp(13185..13670)
DNA (486bp) protein (162aa)
50S ribosomal protein L3 Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N3M4_ANATU
rplC; 50S ribosomal protein L3
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; species="Bacteria; Chloroflexi; Anaerolineae; Anaerolineales; Anaerolineaceae; Anaerolinea.;" source="Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 /; UNI-1).;"
Displaying 27 items

View Taxonomy