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PLM3-1_170_b1_sep16_scaffold_1550

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1550_1
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

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1..423
DNA (423bp) protein (141aa)
Molybdopterin biosynthesis protein MoeA Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I365_CALAS
moeA; molybdopterin biosynthesis protein MoeA
Molybdopterin biosynthesis protein MoeA {ECO:0000313|EMBL:BAL99702.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3-1_170_b1_sep16_scaffold_1550_2
Pseudomonas pseudoalcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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595..1290
DNA (696bp) protein (232aa)
Putative chemotaxis protein Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MKK5_PSEPS
Putative chemotaxis protein {ECO:0000313|EMBL:ELS26965.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas oleovorans/pseudoalcaligenes group.;" source="Pseudomonas pseudoalcaligenes KF707.;"
lysine exporter protein LysE/YggA
PLM3-1_170_b1_sep16_scaffold_1550_3
RBG_16_Chloroflexi_57_9_curated, Chloroflexi, Bacteria

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1348..2838
DNA (1491bp) protein (497aa)
Glutamine synthetase Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D3U8_PELTS
GlnA; glutamine synthetase
Tax=RBG_16_Chloroflexi_57_9_curated
PLM3-1_170_b1_sep16_scaffold_1550_4
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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comp(2914..3312)
DNA (399bp) protein (133aa)
NADPH-dependent 7-cyano-7-deazaguanine reductase bin=GWB2_Chloroflexi_54_36 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
GTP cyclohydrolase I
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1550_5

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comp(3320..3838)
DNA (519bp) protein (173aa)
hypothetical protein Tax=Deinococcus wulumuqiensis RepID=UPI00034DBDF4
Marine sediment metagenome DNA, contig: S01H1_S24933 {ECO:0000313|EMBL:GAG22005.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_1550_6
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(3857..5434)
DNA (1578bp) protein (526aa)
pckA; phosphoenolpyruvate carboxykinase (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
Phosphoenolpyruvate carboxykinase [ATP] Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A9N1_GEMAT
PLM3-1_170_b1_sep16_scaffold_1550_7
Roseiflexus castenholzii, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

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comp(5431..6372)
DNA (942bp) protein (314aa)
Malate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_00487}; EC=1.1.1.37 {ECO:0000255|HAMAP-Rule:MF_00487};; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus castenholzii (strain DSM 13941 / HLO8).;"
Malate dehydrogenase Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=MDH_ROSCS
malate dehydrogenase
PLM3-1_170_b1_sep16_scaffold_1550_8
Limnoraphis robusta, Limnoraphis, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(6393..6920)
DNA (528bp) protein (176aa)
hypothetical protein Tax=Calothrix sp. PCC 7103 RepID=UPI000306C328
Uncharacterized protein {ECO:0000313|EMBL:KKD38174.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Limnoraphis.;" source="Limnoraphis robusta CS-951.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_1550_9
RBG_16_Chloroflexi_58_14_curated, Chloroflexi, Bacteria

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comp(6958..7815)
DNA (858bp) protein (286aa)
Hypothetical membrane protein bin=GWC2_Chloroflexi_49_37 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
hypothetical protein
Tax=RBG_16_Chloroflexi_58_14_curated
PLM3-1_170_b1_sep16_scaffold_1550_10
RBG_16_Chloroflexi_58_14_curated, Chloroflexi, Bacteria

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comp(7971..9347)
DNA (1377bp) protein (459aa)
Putative M20 family peptidase bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
putative M20 family peptidase
Tax=RBG_16_Chloroflexi_58_14_curated
PLM3-1_170_b1_sep16_scaffold_1550_11

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9511..9945
DNA (435bp) protein (145aa)
Marine sediment metagenome DNA, contig: S01H1_L07843 {ECO:0000313|EMBL:GAF77865.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
PLM3-1_170_b1_sep16_scaffold_1550_12
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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9958..10428
DNA (471bp) protein (157aa)
50S ribosomal protein L25 Tax=uncultured Chloroflexi bacterium RepID=H5SL37_9CHLR bin=RBG9 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1550_13
unknown

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10386..10541
DNA (156bp) protein (52aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1550_14
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

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comp(10575..11153)
DNA (579bp) protein (193aa)
MutT/nudix family protein Tax=uncultured Chloroflexi bacterium RepID=H5SL38_9CHLR bin=RBG9 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_1550_15
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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comp(11271..12158)
DNA (888bp) protein (296aa)
Putative uncharacterized protein bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1550_16
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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12205..13611
DNA (1407bp) protein (469aa)
Peptidase, M20/M25/M40 family bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
peptidase, M20/M25/M40 family
Tax=RBG_13_Deltaproteobacteria_61_14_curated
PLM3-1_170_b1_sep16_scaffold_1550_17
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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13772..14158
DNA (387bp) protein (129aa)
Response regulator receiver protein Tax=Anaerolinea thermophila UNI-1 RepID=E8N5F5_ANATU bin=RBG9 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
response regulator receiver protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1550_18
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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14121..15650
DNA (1530bp) protein (510aa)
atm:ANT_16410 peptidase M23 family protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
peptidase M23 family protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1550_19
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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15748..17349
DNA (1602bp) protein (534aa)
atm:ANT_16400 hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1550_20
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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17349..17801
DNA (453bp) protein (151aa)
Putative uncharacterized protein bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1550_21
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

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17798..18067
DNA (270bp) protein (90aa)
ThiamineS protein Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LUJ6_DESBD
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1550_trna_1
unknown

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18134..18206
DNA (73bp)
transferRNA Arg
PLM3-1_170_b1_sep16_scaffold_1550_22
CG_Anaero_03, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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18392..18814
DNA (423bp) protein (141aa)
Response regulator receiver protein Tax=Anaerolinea thermophila UNI-1 RepID=E8N5F5_ANATU bin=RBG9 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
response regulator receiver protein
Tax=CG_Anaero_03
PLM3-1_170_b1_sep16_scaffold_1550_23
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

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18925..20553
DNA (1629bp) protein (543aa)
atm:ANT_20460 hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_1550_24
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

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comp(20555..20953)
DNA (399bp) protein (133aa)
hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
gas vesicle protein
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_1550_25
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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comp(21070..21525)
DNA (456bp) protein (152aa)
hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=BJP_IG2157_Anaerolineales_55_23
PLM3-1_170_b1_sep16_scaffold_1550_26
RBG_16_Chloroflexi_47_49_curated, Chloroflexi, Bacteria

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comp(21548..21814)
DNA (267bp) protein (89aa)
Hypothetical membrane protein bin=GWD2_Chloroflexi_49_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_16_Chloroflexi_47_49_curated
PLM3-1_170_b1_sep16_scaffold_1550_27
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

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comp(21811..22206)
DNA (396bp) protein (132aa)
trmU; putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N4Y8_ANATU
Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
Displaying 28 items

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