ggKbase home page

PLM3-1_170_b1_sep16_scaffold_1578

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_1578_1
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

3..182
DNA (180bp) protein (60aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1); K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] bin=RBG_19FT_COMBO_GAL15_69_19 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1578_2
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

302..1516
DNA (1215bp) protein (405aa)
putative 3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
fatty-acid oxidation protein subunit alpha Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B732C6
Tax=CG_Anaero_02
PLM3-1_170_b1_sep16_scaffold_1578_3
R_WOR_2_67_20, WOR-2, Bacteria

Not on your lists

1629..2423
DNA (795bp) protein (265aa)
paaF; enoyl-CoA hydratase (EC:4.2.1.17)
crotonase Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B31F99
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_67_20_curated
PLM3-1_170_b1_sep16_scaffold_1578_4
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

2506..2790
DNA (285bp) protein (95aa)
Tax=RBG_13_Chloroflexi_66_10_curated
PLM3-1_170_b1_sep16_scaffold_1578_5
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

2876..4045
DNA (1170bp) protein (390aa)
Butyryl-CoA dehydrogenase Tax=Desulfitobacterium metallireducens DSM 15288 RepID=G6GEG0_9FIRM
acyl-CoA dehydrogenase
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1578_6
Chloroflexus aggregans, Chloroflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

4127..5293
DNA (1167bp) protein (389aa)
Acyl-CoA dehydrogenase domain protein Tax=Chloroflexus aggregans (strain MD-66 / DSM 9485) RepID=B8G383_CHLAD
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ACL25256.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus.;" source="Chloroflexus aggregans (strain MD-66 / DSM 9485).;"
PLM3-1_170_b1_sep16_scaffold_1578_7
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

5290..6171
DNA (882bp) protein (294aa)
Electron transfer flavoprotein, beta subunit Tax=Azoarcus sp. KH32C RepID=H0Q4Z5_9RHOO
fixA_etfB; electron transfer flavoprotein, beta subunit
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1578_8
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

6247..7236
DNA (990bp) protein (330aa)
Electron transfer flavoprotein alpha subunit Tax=Vulcanisaeta moutnovskia (strain 768-28) RepID=F0QYA4_VULM7
electron transfer flavoprotein subunit alpha
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1578_9
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

7305..7955
DNA (651bp) protein (217aa)
pyrimidine 5-nucleotidase bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
pyrimidine 5-nucleotidase family protein
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_1578_10
unknown

Not on your lists

8170..8781
DNA (612bp) protein (204aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1578_11
BJP_IG2157_Anaerolineales_55_23, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

8774..9094
DNA (321bp) protein (107aa)
ATP-dependent Clp protease adapter protein ClpS Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NR93_ROSCS
ATP-dependent Clp protease adaptor protein ClpS
Tax=BJP_IG2157_Anaerolineales_55_23
PLM3-1_170_b1_sep16_scaffold_1578_12
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

9295..10659
DNA (1365bp) protein (455aa)
Hypothetical conserved protein Tax=uncultured candidate division OP1 bacterium RepID=H5ST39_9BACT bin=16ft_combo_ws3_JS1 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=CG_Anaero_02
PLM3-1_170_b1_sep16_scaffold_1578_13
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

10907..13600
DNA (2694bp) protein (898aa)
atm:ANT_15410 DnaQ exonuclease/DinG helicase family protein; K03722 ATP-dependent DNA helicase DinG [EC:3.6.4.12] bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
DnaQ exonuclease/DinG helicase family protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_1578_14
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

Not on your lists

13597..14790
DNA (1194bp) protein (398aa)
Two-component sensor histidine kinase bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
integral membrane sensor signal transduction histidine kinase
Tax=GWB2_Chloroflexi_54_36_curated
PLM3-1_170_b1_sep16_scaffold_1578_15
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

14787..15455
DNA (669bp) protein (223aa)
LuxR family transcriptional regulator Tax=Amycolatopsis balhimycina RepID=UPI00037F1F8E
two component LuxR family transcriptional regulator
Tax=RBG_13_Chloroflexi_66_10_curated
PLM3-1_170_b1_sep16_scaffold_1578_16
CG_Anaero_04, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

15702..16649
DNA (948bp) protein (316aa)
Putative ABC transporter ATP-binding protein Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N2P3_ANATU
putative ABC transporter ATP-binding protein
Tax=CG_Anaero_04
PLM3-1_170_b1_sep16_scaffold_1578_17

Not on your lists

16654..17874
DNA (1221bp) protein (407aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2CT12_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD89052.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ABC transporter permease
PLM3-1_170_b1_sep16_scaffold_1578_18
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

17953..19167
DNA (1215bp) protein (405aa)
Putative ABC transporter permease protein Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N2P5_ANATU
ABC transporter permease
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_1578_19
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

19364..20176
DNA (813bp) protein (271aa)
Peptidase M55 D-aminopeptidase Tax=Pedosphaera parvula Ellin514 RepID=B9XIR2_9BACT
Peptidase M55 D-aminopeptidase {ECO:0000313|EMBL:EEF60325.1}; species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55
PLM3-1_170_b1_sep16_scaffold_1578_20
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

20378..21745
DNA (1368bp) protein (456aa)
atm:ANT_25370 hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_1578_21
unknown

Not on your lists

comp(21863..22411)
DNA (549bp) protein (183aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_1578_22
unknown

Not on your lists

22526..22633
DNA (108bp) protein (36aa)

This feature has no annotations

Displaying 22 items

View Taxonomy