ggKbase home page

PLM3-1_170_b1_sep16_scaffold_3158

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_3158_1
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

3..218
DNA (216bp) protein (72aa)
Rhodanese domain protein bin=GWB1_Spirochaetes_59_5 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
rhodanese
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_3158_2
unknown

Not on your lists

244..633
DNA (390bp) protein (130aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_3158_3
unknown

Not on your lists

722..1123
DNA (402bp) protein (134aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_3158_4
unknown

Not on your lists

1152..1457
DNA (306bp) protein (102aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_3158_5
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

1481..2062
DNA (582bp) protein (194aa)
Gluconate 2-dehydrogenase Tax=Caldilinea aerophila DSM 14535 = NBRC 104270 RepID=I0I2J8_CALAS bin=RBG9 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
adhB; gluconate 2-dehydrogenase
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_3158_6
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

2108..2731
DNA (624bp) protein (208aa)
putative iron-sulfur protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
putative iron-sulfur protein
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_3158_7
RBG_16_Chloroflexi_47_49_curated, Chloroflexi, Bacteria

Not on your lists

2742..3536
DNA (795bp) protein (265aa)
cytochrome c-type biogenesis protein (EC:4.4.1.17)
cytochrome c biogenesis protein transmembrane protein; K06196 cytochrome c-type biogenesis protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
Tax=RBG_16_Chloroflexi_47_49_curated
PLM3-1_170_b1_sep16_scaffold_3158_8
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

3533..4096
DNA (564bp) protein (188aa)
Cytochrome C biogenesis protein Tax=uncultured bacterium RepID=B6EWV3_9BACT bin=RBG9 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG9 organism_group=Chloroflexi
resA; cytochrome c biogenesis protein
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_3158_9
unknown

Not on your lists

comp(4194..4295)
DNA (102bp) protein (34aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_3158_10
RBG_16_CPR_42_10_curated, Bacteria

Not on your lists

comp(4234..5505)
DNA (1272bp) protein (424aa)
hypothetical protein Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI0003771627
hypothetical protein
Tax=RBG_16_CPR_42_10_curated
PLM3-1_170_b1_sep16_scaffold_3158_11
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

5693..6118
DNA (426bp) protein (142aa)
hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_3158_12
RBG_19FT_COMBO_Chloroflexi_47_9_curated, Chloroflexi, Bacteria

Not on your lists

6390..7457
DNA (1068bp) protein (356aa)
Cytochrome c oxidase subunit 2 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F349_CONWI
cytochrome C oxidase subunit II
Tax=RBG_19FT_COMBO_Chloroflexi_47_9_curated
PLM3-1_170_b1_sep16_scaffold_3158_13
RBG_19FT_COMBO_Chloroflexi_49_13_curated, Chloroflexi, Bacteria

Not on your lists

7476..8126
DNA (651bp) protein (217aa)
Methylase involved in ubiquinone/menaquinone biosynthesis bin=GWC2_Chloroflexi_49_37 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
type 11 methyltransferase
Tax=RBG_19FT_COMBO_Chloroflexi_49_13_curated
PLM3-1_170_b1_sep16_scaffold_3158_14
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

8123..8707
DNA (585bp) protein (195aa)
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Tax=Oscillochloris trichoides DG-6 RepID=E1IEP4_9CHLR bin=RBG9 species=Oscillochloris trichoides genus=Oscillochloris taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_3158_15
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

8716..9483
DNA (768bp) protein (256aa)
Putative uncharacterized protein bin=GWD2_Chloroflexi_49_16 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
prolipoprotein diacylglyceryl transferase family protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_3158_16
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

9480..10214
DNA (735bp) protein (245aa)
Uncharacterized protein bin=GWB2_Chloroflexi_54_36 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_3158_17
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

10294..10626
DNA (333bp) protein (111aa)
hypothetical protein; K09771 hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_3158_18
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

10751..11602
DNA (852bp) protein (284aa)
hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_3158_19
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

11599..12141
DNA (543bp) protein (181aa)
copC; copper resistance protein C; K07156 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
copC domain protein
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_3158_20
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

12388..13056
DNA (669bp) protein (223aa)
Putative oxidoreductase Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8MZ72_ANATU
putative oxidoreductase
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_3158_21
unknown

Not on your lists

13106..13396
DNA (291bp) protein (97aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_3158_22
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(13424..14413)
DNA (990bp) protein (330aa)
Hemolysin-type calcium-binding region Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VKF8_9CYAN
Hemolysin-type calcium-binding region
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM3-1_170_b1_sep16_scaffold_3158_23
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(14756..15187)
DNA (432bp) protein (144aa)
Putative uncharacterized protein Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BHG3_MEISD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH62201.1}; Flags: Precursor;; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) (Thermus; silvanus).;"
Displaying 23 items

View Taxonomy