ggKbase home page

PLM3-1_170_b1_sep16_scaffold_122

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_122_1
unknown

Not on your lists

2..130
DNA (129bp) protein (43aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_122_2
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

168..614
DNA (447bp) protein (149aa)
Transcriptional regulator, MerR family Tax=Paenibacillus curdlanolyticus YK9 RepID=E0I5S3_9BACL
regulatory protein MerR
Tax=RBG_16_Chloroflexi_52_11_curated
PLM3-1_170_b1_sep16_scaffold_122_3
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

817..2160
DNA (1344bp) protein (448aa)
hypothetical protein Tax=Frankia sp. BMG5.12 RepID=UPI0003611FB1
Uncharacterized protein {ECO:0000313|EMBL:ETY82538.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_122_4
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

comp(2623..3057)
DNA (435bp) protein (145aa)
Putative uncharacterized protein bin=GWB2_Chloroflexi_49_20 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
hypothetical protein
Tax=GWC2_Chloroflexi_49_37_curated
PLM3-1_170_b1_sep16_scaffold_122_5
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

comp(3062..3484)
DNA (423bp) protein (141aa)
id=1847659 bin=GWD2_Chloroflexi_49_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
Tax=GWC2_Chloroflexi_49_37_curated
PLM3-1_170_b1_sep16_scaffold_122_6
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(3477..3824)
DNA (348bp) protein (116aa)
seg 64..78 bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_122_7
RBG_13_Chloroflexi_50_21_curated, Chloroflexi, Bacteria

Not on your lists

comp(4070..4987)
DNA (918bp) protein (306aa)
Hypothetical membrane protein bin=GWB2_Chloroflexi_49_20 species=Anaerobaculum mobile genus=Anaerobaculum taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
hypothetical protein
Tax=RBG_13_Chloroflexi_50_21_curated
PLM3-1_170_b1_sep16_scaffold_122_8
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

5124..5738
DNA (615bp) protein (205aa)
manganese superoxide dismutase; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] bin=bin1_lowGC species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin1_lowGC organism_group=Unknown_CP
sodA; Superoxide dismutase
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_122_9
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

Not on your lists

5848..6249
DNA (402bp) protein (134aa)
putative ferredoxin bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
putative ferredoxin
Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
PLM3-1_170_b1_sep16_scaffold_122_10
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

6346..7800
DNA (1455bp) protein (485aa)
Fumarate hydratase class II bin=GWB2_Chloroflexi_54_36 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
fumarate lyase
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM3-1_170_b1_sep16_scaffold_122_11
unknown

Not on your lists

7802..8761
DNA (960bp) protein (320aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_122_12

Not on your lists

comp(8883..9746)
DNA (864bp) protein (288aa)
hypothetical protein Tax=Thermus islandicus RepID=UPI0003B4EC73
Marine sediment metagenome DNA, contig: S01H1_L05577 {ECO:0000313|EMBL:GAF82609.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
ABC transporter
PLM3-1_170_b1_sep16_scaffold_122_13
RBG_13_Chloroflexi_48_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(9832..10758)
DNA (927bp) protein (309aa)
ABC transporter Tax=Thermus islandicus RepID=UPI0003B54F76
ABC transporter-like protein
Tax=RBG_13_Chloroflexi_48_10_curated
PLM3-1_170_b1_sep16_scaffold_122_14
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(10879..11745)
DNA (867bp) protein (289aa)
rxy:Rxyl_0084 putative metal cation transporter bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
putative metal cation transporter
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM3-1_170_b1_sep16_scaffold_122_15
unknown

Not on your lists

11765..11944
DNA (180bp) protein (60aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_122_16
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

comp(12028..13101)
DNA (1074bp) protein (358aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K2CR35_9BACT
twin-arginine translocation pathway signal protein
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_122_17
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(13098..13802)
DNA (705bp) protein (235aa)
DtxR family iron dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
FeoA family protein
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_122_18
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13827..14396
DNA (570bp) protein (190aa)
Mov34/MPN/PAD-1 family protein Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SK76_THEM7
Mov34/MPN/PAD-1 family protein
Mov34/MPN/PAD-1 family protein {ECO:0000313|EMBL:ADU51217.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
PLM3-1_170_b1_sep16_scaffold_122_19
GWC2_Chloroflexi_49_37_curated, Chloroflexi, Bacteria

Not on your lists

14482..15114
DNA (633bp) protein (211aa)
Glycerol-3-phosphate acyltransferase bin=GWB2_Chloroflexi_49_20 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
hypothetical protein
Tax=GWC2_Chloroflexi_49_37_curated
PLM3-1_170_b1_sep16_scaffold_122_20
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(15128..16012)
DNA (885bp) protein (295aa)
Oligopeptide transport system permease protein appC bin=GWC2_Chloroflexi_49_37 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
binding-protein-dependent transport system inner membrane protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_122_21
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(16242..17273)
DNA (1032bp) protein (344aa)
Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) bin=GWD2_Chloroflexi_49_16 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Chloroflexi_49_16 organism_group=Chloroflexi organism_desc=Good +
binding-protein-dependent transport system inner membrane protein
Tax=CG_Anaero_02
PLM3-1_170_b1_sep16_scaffold_122_22
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(17412..19151)
DNA (1740bp) protein (580aa)
ABC-type dipeptide transport system, periplasmic component bin=GWC2_Chloroflexi_49_37 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
putative peptide ABC transporter substrate binding protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_122_23
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19659..20609)
DNA (951bp) protein (317aa)
Putative ABC transporter permease protein Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N2W6_ANATU
ABC transporter permease
Tax=RBG_16_Gammaproteobacteria_66_13_curated
PLM3-1_170_b1_sep16_scaffold_122_24
BJP_08E140C01_Anaerolineales_40_8, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(20881..21960)
DNA (1080bp) protein (360aa)
ABC transporter membrane spanning protein (Dipeptide) Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K0U0_AGRVS
dppB; peptide ABC transporter permease
Tax=BJP_08E140C01_Anaerolineales_40_8
PLM3-1_170_b1_sep16_scaffold_122_25
RIFOXYC12_FULL_Chloroflexi_59_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(22129..23940)
DNA (1812bp) protein (604aa)
ABC transporter substrate binding protein (Dipeptide) Tax=Oscillochloris trichoides DG-6 RepID=E1IA56_9CHLR
dppA; ABC transporter substrate binding protein (dipeptide)
Tax=RIFOXYC12_FULL_Chloroflexi_59_14_curated
PLM3-1_170_b1_sep16_scaffold_122_26
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

24160..25011
DNA (852bp) protein (284aa)
hypothetical protein; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_122_27
RBG_16_Chloroflexi_48_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(25027..25941)
DNA (915bp) protein (305aa)
atm:ANT_16770 secF; protein-export membrane protein SecF; K03074 preprotein translocase subunit SecF bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
secF; protein-export membrane protein SecF
Tax=RBG_16_Chloroflexi_48_8_curated
PLM3-1_170_b1_sep16_scaffold_122_28
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

comp(26024..27487)
DNA (1464bp) protein (488aa)
atm:ANT_16760 secD; protein-export membrane protein SecD; K03072 preprotein translocase subunit SecD bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
protein-export membrane protein SecD
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_122_29
RBG_16_Chloroflexi_48_7_curated, Chloroflexi, Bacteria

Not on your lists

comp(27646..27879)
DNA (234bp) protein (78aa)
Putative periplasmic or secreted lipoprotein Tax=Cylindrospermum stagnale PCC 7417 RepID=K9X258_9NOST
putative periplasmic or secreted lipoprotein
Tax=RBG_16_Chloroflexi_48_7_curated
PLM3-1_170_b1_sep16_scaffold_122_30
R_OP11_Daviesbacteria_41_32, Daviesbacteria, Microgenomates, Bacteria

Not on your lists

comp(27879..28136)
DNA (258bp) protein (86aa)
HicB family protein Tax=Desulfosporosinus sp. OT RepID=G2FV59_9FIRM
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OP11_Daviesbacteria_41_32_curated
Displaying items 1-30 of 54 in total

View Taxonomy