ggKbase home page

PLM3-1_170_b1_sep16_scaffold_531

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_531_1
RIFOXYD12_FULL_Chloroflexi_57_15_curated, Chloroflexi, Bacteria

Not on your lists

comp(2..274)
DNA (273bp) protein (91aa)
putative deoxynucleoside kinase (EC:2.7.1.-)
Putative deoxynucleoside kinase bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
Tax=RIFOXYD12_FULL_Chloroflexi_57_15_curated
PLM3-1_170_b1_sep16_scaffold_531_2
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

424..1113
DNA (690bp) protein (230aa)
RNA polymerase ECF-type sigma factor bin=GWB2_Chloroflexi_49_20 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
putative RNA polymerase ECF-type sigma factor
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_531_3
unknown

Not on your lists

1159..1713
DNA (555bp) protein (185aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_531_4
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

1953..2963
DNA (1011bp) protein (337aa)
Hypothetical membrane protein bin=GWB2_Chloroflexi_49_20 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWB2_Chloroflexi_49_20 organism_group=Chloroflexi organism_desc=Good
hypothetical protein
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_531_5
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

3157..3774
DNA (618bp) protein (206aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor Tax=Nitrolancetus hollandicus Lb RepID=I4EN25_9BACT bin=RBG9 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_531_6
Caldilinea aerophila, Caldilinea, Caldilineales, Caldilineae, Chloroflexi, Bacteria

Not on your lists

3784..4821
DNA (1038bp) protein (346aa)
Uncharacterized protein Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I5P7_CALAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM00585.1}; species="Bacteria; Chloroflexi; Caldilineae; Caldilineales; Caldilineaceae; Caldilinea.;" source="Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 /; STL-6-O1).;"
PLM3-1_170_b1_sep16_scaffold_531_7
CG_Anaero_02, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

5042..5518
DNA (477bp) protein (159aa)
Tax=CG_Anaero_02
PLM3-1_170_b1_sep16_scaffold_531_8
unknown

Not on your lists

5506..5790
DNA (285bp) protein (95aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_531_9
RBG_16_Chloroflexi_52_11_curated, Chloroflexi, Bacteria

Not on your lists

5895..6188
DNA (294bp) protein (98aa)
Putative uncharacterized protein bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein
Tax=RBG_16_Chloroflexi_52_11_curated
PLM3-1_170_b1_sep16_scaffold_531_10
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

6511..7020
DNA (510bp) protein (170aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_Zixibacteria_53_22_curated
PLM3-1_170_b1_sep16_scaffold_531_11
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7073..7546
DNA (474bp) protein (158aa)
mannose-6-phosphate isomerase Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003763098
Mannose-6-phosphate isomerase {ECO:0000313|EMBL:KJB93433.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
cupin 2 barrel domain-containing protein
PLM3-1_170_b1_sep16_scaffold_531_12

Not on your lists

7609..8148
DNA (540bp) protein (180aa)
Uncharacterized protein {ECO:0000313|EMBL:AIA12284.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_531_13
RBG_13_Chloroflexi_48_10_curated, Chloroflexi, Bacteria

Not on your lists

8213..8752
DNA (540bp) protein (180aa)
Putative uncharacterized protein bin=GWC2_Chloroflexi_73_18 species=Mycobacterium rhodesiae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=RBG_13_Chloroflexi_48_10_curated
PLM3-1_170_b1_sep16_scaffold_531_14
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(8700..9764)
DNA (1065bp) protein (355aa)
holA; DNA polymerase III subunit delta (EC:2.7.7.7)
DNA polymerase III subunit delta bin=GWC2_Chloroflexi_49_37 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
Tax=RBG_16_Chloroflexi_63_12_curated
PLM3-1_170_b1_sep16_scaffold_531_15
RBG_19FT_COMBO_Chloroflexi_50_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(9852..10256)
DNA (405bp) protein (135aa)
hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_50_10_curated
PLM3-1_170_b1_sep16_scaffold_531_16
unknown

Not on your lists

comp(10656..10826)
DNA (171bp) protein (57aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_531_17
RBG_19FT_COMBO_Chloroflexi_62_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(10863..11513)
DNA (651bp) protein (217aa)
Transcriptional regulator, MerR family Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TRD3_9CHLR bin=RBG9 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
MerR family transcriptional regulator
Tax=RBG_19FT_COMBO_Chloroflexi_62_14_curated
PLM3-1_170_b1_sep16_scaffold_531_18
Roseiflexus sp. RS-1, Roseiflexus, Chloroflexales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

11764..12516
DNA (753bp) protein (251aa)
Two component transcriptional regulator, winged helix family Tax=Roseiflexus sp. (strain RS-1) RepID=A5URC4_ROSS1
two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABQ89177.1}; species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; Roseiflexus.;" source="Roseiflexus sp. (strain RS-1).;"
PLM3-1_170_b1_sep16_scaffold_531_19
RBG_13_Chloroflexi_68_17_curated, Chloroflexi, Bacteria

Not on your lists

comp(12616..15144)
DNA (2529bp) protein (843aa)
atm:ANT_28860 priA; primosomal protein N' (EC:3.6.1.-); K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
priA; primosomal protein N' (EC:3.6.1.-)
Tax=RBG_13_Chloroflexi_68_17_curated
PLM3-1_170_b1_sep16_scaffold_531_20
unknown

Not on your lists

comp(15244..15990)
DNA (747bp) protein (249aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_531_21
RBG_19FT_COMBO_Chloroflexi_56_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(15987..16826)
DNA (840bp) protein (280aa)
Putative uncharacterized protein bin=GWC2_Chloroflexi_49_37 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
hypothetical protein
Tax=RBG_19FT_COMBO_Chloroflexi_56_12_curated
PLM3-1_170_b1_sep16_scaffold_531_22
CG_Anaero_01, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

comp(16855..17292)
DNA (438bp) protein (146aa)
Uncharacterized protein Tax=uncultured bacterium RepID=K1ZEV7_9BACT
hypothetical protein
Tax=CG_Anaero_01
PLM3-1_170_b1_sep16_scaffold_531_23
RBG_16_Gammaproteobacteria_66_13_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17471..18097)
DNA (627bp) protein (209aa)
Rhomboid family protein bin=GWB2_Chloroflexi_54_36 species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
rhomboid family protein
Tax=RBG_16_Gammaproteobacteria_66_13_curated
PLM3-1_170_b1_sep16_scaffold_531_24
RBG_16_Chloroflexi_54_11_curated, Chloroflexi, Bacteria

Not on your lists

comp(18282..18902)
DNA (621bp) protein (207aa)
Guanylate kinase bin=GWC2_Chloroflexi_49_37 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
gmk; guanylate kinase
Tax=RBG_16_Chloroflexi_54_11_curated
PLM3-1_170_b1_sep16_scaffold_531_25
RBG_16_Chloroflexi_64_43_curated, Chloroflexi, Bacteria

Not on your lists

19055..19390
DNA (336bp) protein (112aa)
hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_16_Chloroflexi_64_43_curated
PLM3-1_170_b1_sep16_scaffold_531_26
unknown

Not on your lists

19408..20013
DNA (606bp) protein (202aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_531_27

Not on your lists

comp(19917..20390)
DNA (474bp) protein (158aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN28753.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_531_28
unknown

Not on your lists

comp(20345..20536)
DNA (192bp) protein (64aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_531_29
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(20538..22142)
DNA (1605bp) protein (535aa)
atm:ANT_01680 hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_13_Chloroflexi_66_10_curated
PLM3-1_170_b1_sep16_scaffold_531_30
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

comp(22154..23152)
DNA (999bp) protein (333aa)
hypothetical protein bin=RBG9 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=RBG9 organism_group=Chloroflexi
hypothetical protein
Tax=RBG_13_Chloroflexi_66_10_curated
Displaying items 1-30 of 45 in total

View Taxonomy