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PLM3-1_170_b1_sep16_scaffold_7728

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_7728_1
unknown

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312..506
DNA (195bp) protein (65aa)

This feature has no annotations

PLM3-1_170_b1_sep16_scaffold_7728_2

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comp(427..1194)
DNA (768bp) protein (256aa)
Uncharacterized protein {ECO:0000313|EMBL:KKK99794.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Transposase bin=GWC2_Nitrospirae_57_13 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
transposase
PLM3-1_170_b1_sep16_scaffold_7728_3
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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1385..1957
DNA (573bp) protein (191aa)
RNA polymerase, sigma-24 subunit, ECF subfamily bin=GWF2_Melioribacter_38_21 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
ECF subfamily RNA polymerase sigma-24 factor
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b1_sep16_scaffold_7728_4
RIFOXYA2_FULL_Ignavibacteria_37_17_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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1973..3073
DNA (1101bp) protein (367aa)
transmembrane anti-sigma factor bin=RAAC39 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=RAAC39 organism_group=Ignavibacteria
transmembrane anti-sigma factor
Tax=RIFOXYA2_FULL_Ignavibacteria_37_17_curated
PLM3-1_170_b1_sep16_scaffold_7728_5
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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3063..3704
DNA (642bp) protein (214aa)
Putative uncharacterized protein bin=GWA2_Ignavibacteria_55_11 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b1_sep16_scaffold_7728_6
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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3701..4150
DNA (450bp) protein (150aa)
Putative uncharacterized protein bin=GWA2_Ignavibacteria_55_11 species=Colwellia psychrerythraea genus=Colwellia taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
hypothetical protein
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b1_sep16_scaffold_7728_7
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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4263..6203
DNA (1941bp) protein (647aa)
Putative membrane associated hydrolase bin=GWF2_Ignavibacteria_35_20 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
membrane associated hydrolase
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b1_sep16_scaffold_7728_8
RIFOXYD12_FULL_Ignavibacteria_36_8_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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7156..7542
DNA (387bp) protein (129aa)
id=4196672 bin=GWF2_Ignavibacteria_35_20 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
Tax=RIFOXYD12_FULL_Ignavibacteria_36_8_curated
PLM3-1_170_b1_sep16_scaffold_7728_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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7511..8410
DNA (900bp) protein (300aa)
hypothetical protein Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B37C8E
modification methylase
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM3-1_170_b1_sep16_scaffold_7728_10
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

8410..8679
DNA (270bp) protein (90aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037239F1
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM3-1_170_b1_sep16_scaffold_7728_11
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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8709..9122
DNA (414bp) protein (138aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037239F1
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM3-1_170_b1_sep16_scaffold_7728_12
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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9169..11319
DNA (2151bp) protein (717aa)
Peptidase S9B dipeptidylpeptidase IV domain protein Tax=Caldithrix abyssi DSM 13497 RepID=H1XS03_9BACT
peptidase S9
Tax=RBG_16_Ignavibacteria_34_14_curated
PLM3-1_170_b1_sep16_scaffold_7728_trna_1
unknown

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comp(11341..11414)
DNA (74bp)
transferRNA Arg
PLM3-1_170_b1_sep16_scaffold_7728_13
Methanobacterium sp. Maddingley MBC34, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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11492..11917
DNA (426bp) protein (142aa)
Uncharacterized protein Tax=Methanobacterium sp. MB1 RepID=U6EEB5_9EURY
hypothetical protein
Formamidopyrimidine-DNA glycosylase {ECO:0000313|EMBL:EKQ55003.1}; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium sp. Maddingley MBC34.;"
Displaying 14 items

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