ggKbase home page

PLM3-1_170_b1_sep16_scaffold_9151

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3-1_170_b1_sep16_scaffold_9151_1
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

3..329
DNA (327bp) protein (109aa)
Putative DNA repair and recombination protein radA Tax=Thaumarchaeota archaeon N4 RepID=V6AU25_9ARCH
DNA repair and recombination protein RadA {ECO:0000256|HAMAP-Rule:MF_00348}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
radA; DNA repair and recombination protein RadA
PLM3-1_170_b1_sep16_scaffold_9151_2
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


363..662
DNA (300bp) protein (100aa)
ribosomal protein L21E; K02889 large subunit ribosomal protein L21e bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
ribosomal protein L21E
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_9151_3
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

666..992
DNA (327bp) protein (109aa)
RNA polymerase Rpb4 bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
RNA polymerase Rpb4
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_9151_4
Candidatus Nitrosopumilus sp. AR2, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

1013..1339
DNA (327bp) protein (109aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus sp. AR2 RepID=K0BE34_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFS83297.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Candidatus Nitrosopumilus sp. AR2.;"
PLM3-1_170_b1_sep16_scaffold_9151_5
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

1336..1494
DNA (159bp) protein (53aa)
hypothetical protein bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
hypothetical protein
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_9151_6
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists


1491..2084
DNA (594bp) protein (198aa)
ribosomal RNA adenine methylase transferase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
Ribosomal RNA adenine methylase transferase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_9151_7

Not on your lists

2081..2623
DNA (543bp) protein (181aa)
Putative uncharacterized protein Tax=uncultured marine crenarchaeote HF4000_ANIW133O4 RepID=B3T4D0_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKM04225.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative methylase
PLM3-1_170_b1_sep16_scaffold_9151_8

Not on your lists

comp(2624..3652)
DNA (1029bp) protein (343aa)
Isocitrate/isopropylmalate dehydrogenase (IDH1, IDH2, icd) {ECO:0000313|EMBL:AIF04584.1}; EC=1.1.1.42 {ECO:0000313|EMBL:AIF04584.1};; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_175_E04.;"
isocitrate/isopropylmalate dehydrogenase (EC:1.1.1.42)
isocitrate dehydrogenase Tax=Marine Group I thaumarchaeote SCGC AB-629-I23 RepID=UPI00035C2D7B
PLM3-1_170_b1_sep16_scaffold_9151_9
Thaumarchaeota archaeon N4, Thaumarchaeota, Archaea

Not on your lists

3748..4500
DNA (753bp) protein (251aa)
Metallophosphoesterase Tax=Thaumarchaeota archaeon N4 RepID=V6AUC6_9ARCH
Metallophosphoesterase {ECO:0000313|EMBL:CDI06073.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota.;" source="Thaumarchaeota archaeon N4.;"
calcineurin-like phosphoesterase family protein
PLM3-1_170_b1_sep16_scaffold_9151_trna_1
unknown

Not on your lists

4533..4616
DNA (84bp)
transferRNA Ser
PLM3-1_170_b1_sep16_scaffold_9151_10
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

4901..5071
DNA (171bp) protein (57aa)
Uncharacterized protein Tax=Nitrosopumilus maritimus (strain SCM1) RepID=A9A2M6_NITMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX13265.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
PLM3-1_170_b1_sep16_scaffold_9151_11

Not on your lists

comp(5061..5885)
DNA (825bp) protein (275aa)
Uncharacterized protein Tax=Candidatus Nitrosoarchaeum limnia BG20 RepID=S2E7A3_9ARCH
Transglutaminase-like superfamily protein {ECO:0000313|EMBL:KFM14994.1}; species="Archaea; Thaumarchaeota; unclassified Thaumarchaeota; Marine Group I.;" source="Marine Group I thaumarchaeote SCGC AAA799-O18.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_9151_12

Not on your lists

comp(5893..7053)
DNA (1161bp) protein (387aa)
Uncharacterized protein Tax=Candidatus Nitrosopumilus salaria BD31 RepID=I3D5N0_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:AIF12440.1}; species="Archaea; Thaumarchaeota; environmental samples.;" source="uncultured marine thaumarchaeote KM3_55_G04.;"
hypothetical protein
PLM3-1_170_b1_sep16_scaffold_9151_13
Candidatus Nitrosoarchaeum koreensis, Candidatus Nitrosoarchaeum, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

7178..8452
DNA (1275bp) protein (425aa)
Major facilitator superfamily MFS 1 Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CX66_9ARCH
Major facilitator superfamily MFS 1 {ECO:0000313|EMBL:EGP93868.1}; species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Candidatus Nitrosoarchaeum.;" source="Candidatus Nitrosoarchaeum koreensis MY1.;"
major facilitator superfamily MFS
PLM3-1_170_b1_sep16_scaffold_9151_14
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(8612..10177)
DNA (1566bp) protein (522aa)
2-alkenal reductase bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
2-alkenal reductase
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_9151_15
CSP1_1_Thaumarchaeota, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(10293..11117)
DNA (825bp) protein (275aa)
short-chain dehydrogenase/reductase SDR bin=bin2_Thaum species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin2_Thaum organism_group=Archaeon
short-chain dehydrogenase/reductase SDR
Tax=CSP1_1_Thaumarchaeota
PLM3-1_170_b1_sep16_scaffold_9151_16

Not on your lists

comp(11191..11301)
DNA (111bp) protein (37aa)
DEAD/DEAH box helicase domain protein Tax=Candidatus Nitrosoarchaeum koreensis MY1 RepID=F9CZ66_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:KKM02656.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
DEAD/DEAH box helicase domain protein
Displaying 17 items

View Taxonomy